Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00048 ATGTGTGGTTGGAGAGGTGGATTGTTTGTGGAATTGGTTGTTTTTGCAGATATGTGTTTGTTGGTGTCAGGTTTAGGTTCAATGTCTCCTGTTGCTGTTTCTTATGGGGAGAAAGGGCCTGTTTTCTGTGGTTTAAAGTCAGATGGGTCTCATCTTGTGAGCTGTTTTGGTTCAAATTCAGCCATAACTTATGGAACCCCTTCTCATTTCCCATTCATTGGTCTCACTGCTGGTGATGGGTTTGTTTGTGGGCTTCTTTTGGATTCCAACCAACCTTATTGTTGGGGAAGCAGTGGCTATGTTCAAATGGGTGTTCCTCAGCCCATGATCAAAGGAGCTCAATACCTGGAAATTAGTGCTGGTGATTATCATCTGTGTGGACTTCGAACGCCTCTGACTGGAAGGCGTAGGAACACATCATTTGTTGATTGTTGGGGGTACAACATGACCAAAACCTTTGCTTTTGATGGCCCTATTGAATCGATCTCGGCAGGGTCTGAGTTCAACTGTGGCCTGTTTTCTCTTAATAGAACTGTTTTCTGTTGGGGTGATGAGACAAGCAGCCGGGTAATCAGTTTGATACCTAAAGATATGAGGTTTCAAAAGATTGCGTCCGGTGGATATCATGTTTGCGGAATCTTAGAGGGCGCAAATTCGAGAGCGTTCTGTTGGGGAAGGAGCTTAGACATTGAAGAGGAGATCTCAGTTGCATATTCAGGTGAAGGAAATGTAGACATGGTTCCAGTTGATCCATTAGACTCTGTTGTTGGGGGCAAATTCCATGCTTGTGGAATAAAGAGCTTAGACCGTGGTGTGATTTGTTGGGGTTTTACAGTTAAACCAAGTACTCCAGCACCAGATGGGATAAAAGTTTACGACATTGCGGCTGGAGATTACTTCACCTGTGGAATTCTAGCTGAAAAATCTCTCCTGCCTGTTTGCTGGGGTCTTGGATTTCCTACTTCTCTGCCTTTAGCTGTCTCACCTGGAATCTGTAAACCAACTCCTTGTGCTCCTGGTTTCTACGAAATTAGCCAAGACAAAGCTCGGTGTAAGTCGCCGAATTTTCATGTGTGTATGCCCTGCAGTACTGCTTGCCCTCCTGATATGTACCAAAAATTTGAGTGCTCCTTAAAATCTGATAGGCAGTGTGAATATAATTGTTCAAGTTGCTTTTCAAGTGAATGCCTCGCAAACTGCTCATCCATGCTTTCAACTGGTATGATGGGGAAGAAAAATGGGAAGTACTGGCCTATGCAGCAGCTTCCAGTTCTTGTAGCTGAGATTGCTTTTGCTGTGTTTTTGGTAGCTATTGTGTCTTTAACTGCAGTATTATACGTTCGATACAAGTTACGGAATTGCCATTGCTCGGGAAAGGAGTTGAAGTCTAAGAAAAACAAAGGGACTGCCTCTTCCTTCCAGAAGGAAAACTATAAAATACGTCCCGACTTGGATGAGCTGAAAATAAGGAGGGCTCAGATGTTCACCTACGAAGAACTCGAGAGAGCGACGTGTGGGTTTAAGGAAGAGTCTATTGTGGGAAAGGGAAGTTTCTCTTGTGTCTTTCGAGGTGTTTTAAAGGACGGGACGGTCGTAGCAGTAAAACGGGCTATAATGTCTCCCAACATGCAGAAGAATTCAAAGGAGTTCCACACTGAACTTGACTTGCTATCAAGATTAAACCATGCCCATTTGCTTAATCTGCTTGGTTATTGTGAAGAAGGTGGAGAGAGGCTTCTGGTTTATGAGTTCATGGCTCATGGTTCCTTGCATCAGCACCTCCATGGCAAGAACACGGCCTTAAAGGAACAATTAGATTGGATAAGAAGGGTCACAATTGCAGTCCAAGCAGCCAGGGGAATTGAATACTTGCATGGCTATGCTTGTCCTCCCGTCATTCATCGAGACATTAAGTCGTCAAACATTCTCATCGATGAAGAGCATAACGCTCGAGTGGCTGATTTTGGCTTGTCGTTGTTGGGACCAACTGATAGTAGCTCTCCATTAGCCGAGCTACCAGCTGGGACTCTTGGCTATCTTGATCCTGAATACTATAGACTTCATTACCTTACCACCAAGTCTGATGTGTATAGCTTTGGTGTTTTGCTACTAGAAATTCTCAGTGGTAGAAAAGCCATTGATATGCAATATGAAGAAGGGAACATAGTAGAATGGGCAGTGCCTCTGATACGATCTGGAGATATCTCTGCAATTTTAGATCCGATATTAAAACTGCCCTCCGATATCGAGGCCTTGAAGAGGATTGCAAACGTAGCCTGTAAATGTGTGAGAATGAGAGCGAAGGAGAGGCCATCAATGGACAAAGTGACAACTGCATTGGAGCGTGCTCTTGCCCAATTAATGGGAAGCCCGTGTAACGAACAACCAATCTTACCAACCGAGGTGGTTTTGGGAAGCAGCAGACTACACAAAAAGTCATCTCAAAGATCATCGAACCGTTCGGTCTCCGAAACAGATATAGCAGAAGCTGAAGATCAAAGGTTCGAGTTCAGGGCTCCGTCGTGGATTACATTCCCGAGTGTGACGTCGTCGCAAAGGAGGAAATCCTCAGTGTCGGAAGCAGATGTTGATGGAAAGAATTTGGAAGGAAGAAATGTAGGGAATTGTGGAGGTGTTGGGGATGGATTGAAGAGTTTAGAGGAAGAGATTGGGCCTGCTTCCCCTCAAGAAAAGTTGTTCTTGGAGCACAATTTCTAA 2718 44.44 MCGWRGGLFVELVVFADMCLLVSGLGSMSPVAVSYGEKGPVFCGLKSDGSHLVSCFGSNSAITYGTPSHFPFIGLTAGDGFVCGLLLDSNQPYCWGSSGYVQMGVPQPMIKGAQYLEISAGDYHLCGLRTPLTGRRRNTSFVDCWGYNMTKTFAFDGPIESISAGSEFNCGLFSLNRTVFCWGDETSSRVISLIPKDMRFQKIASGGYHVCGILEGANSRAFCWGRSLDIEEEISVAYSGEGNVDMVPVDPLDSVVGGKFHACGIKSLDRGVICWGFTVKPSTPAPDGIKVYDIAAGDYFTCGILAEKSLLPVCWGLGFPTSLPLAVSPGICKPTPCAPGFYEISQDKARCKSPNFHVCMPCSTACPPDMYQKFECSLKSDRQCEYNCSSCFSSECLANCSSMLSTGMMGKKNGKYWPMQQLPVLVAEIAFAVFLVAIVSLTAVLYVRYKLRNCHCSGKELKSKKNKGTASSFQKENYKIRPDLDELKIRRAQMFTYEELERATCGFKEESIVGKGSFSCVFRGVLKDGTVVAVKRAIMSPNMQKNSKEFHTELDLLSRLNHAHLLNLLGYCEEGGERLLVYEFMAHGSLHQHLHGKNTALKEQLDWIRRVTIAVQAARGIEYLHGYACPPVIHRDIKSSNILIDEEHNARVADFGLSLLGPTDSSSPLAELPAGTLGYLDPEYYRLHYLTTKSDVYSFGVLLLEILSGRKAIDMQYEEGNIVEWAVPLIRSGDISAILDPILKLPSDIEALKRIANVACKCVRMRAKERPSMDKVTTALERALAQLMGSPCNEQPILPTEVVLGSSRLHKKSSQRSSNRSVSETDIAEAEDQRFEFRAPSWITFPSVTSSQRRKSSVSEADVDGKNLEGRNVGNCGGVGDGLKSLEEEIGPASPQEKLFLEHNF 905
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 517257 519974 - Lsi07G000480.1 Lsi07g00048 666470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00048 905 MobiDBLite consensus disorder prediction 808 824 - -
Lsi07g00048 905 SUPERFAMILY RCC1/BLIP-II 26 277 IPR009091 -
Lsi07g00048 905 Gene3D Phosphorylase Kinase; domain 1 478 584 - -
Lsi07g00048 905 ProSitePatterns Protein kinases ATP-binding region signature. 513 535 IPR017441 GO:0005524
Lsi07g00048 905 MobiDBLite consensus disorder prediction 848 882 - -
Lsi07g00048 905 Gene3D Transferase(Phosphotransferase) domain 1 585 792 - -
Lsi07g00048 905 SMART serkin_6 507 784 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi07g00048 905 ProSitePatterns Serine/Threonine protein kinases active-site signature. 632 644 IPR008271 GO:0004672|GO:0006468
Lsi07g00048 905 ProSiteProfiles TNFR/NGFR family cysteine-rich region domain profile. 336 384 IPR001368 GO:0005515
Lsi07g00048 905 SUPERFAMILY Protein kinase-like (PK-like) 489 780 IPR011009 -
Lsi07g00048 905 Gene3D - 19 151 IPR009091 -
Lsi07g00048 905 Gene3D - 152 319 IPR009091 -
Lsi07g00048 905 MobiDBLite consensus disorder prediction 808 827 - -
Lsi07g00048 905 CDD STKc_IRAK 513 782 - -
Lsi07g00048 905 ProSiteProfiles Protein kinase domain profile. 507 784 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi07g00048 905 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN ACR4 8 905 - -
Lsi07g00048 905 Pfam Protein tyrosine and serine/threonine kinase 510 779 IPR001245 GO:0004672|GO:0006468
Lsi07g00048 905 PANTHER RECEPTOR-LIKE KINASE 8 905 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01352 Lsi-Chr1:11708962 Lsi07g00048 Lsi-Chr7:517257 3.90E-112 dispersed
Lsi07g00048 Lsi-Chr7:517257 Lsi08g00234 Lsi-Chr8:5154164 6.06E-07 dispersed
Lsi08g01004 Lsi-Chr8:18524456 Lsi07g00048 Lsi-Chr7:517257 3.94E-66 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83756 PF07714 PK_Tyr_Ser-Thr 3.50E-44 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00048 - - csv:101210393 1805.03