Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00056 ATGGCTTTCCTCTGTTTCTTGGCCCTTTCCCTTTTGGGATCCATGGCCATTCTTCTTCAGAGTTGCATTGCCTTCAATGGGGTTTCCCCTCAACTCAACGACGATATTCTCGGCTTGATTGTCTTCAAATCCGATCTTCATGACCCTTCTTCCTTTCTCGCCTCCTGGAATGAAGACGATGATTCCCCTTGTTCTTGGGAGTTTATTAAATGCAACCCCATTAATGGCAGAGTTTCTGAGGTTTCCATTGATGGGTTGGGGCTATCAGGGAGAATCGGAAGAGGGCTTGAGAAATTGCAGCATCTCAAGGTATTGTCACTCTCTGGTAATAATTTCACTGGCAATCTTAGTCCTCAGCTTGTTCTTCCTCCCAGTCTTGACAGAGTTAATTTCAGTCGTAATAGTTTATCTGGGCGGATTCCCACTTCTCTAATCTCTATGTCCTCCATTAGATTTCTTGATTTTTCTGATAATCTCTTCTCTGGACCTCTTCCTGATGAAATGTTTCTTAATTGCTCTTCGCTTCATTATCTTTCTCTTGCGTCTAATATGCTTCAAGGCCCTGTCCCCAACACATTGCCCACAAGGTGTTTGTATTTAAACACTCTCAATCTTTCAGCCAATCAATTTTCTGGTAGCTTGAATTTTGCGCCTGGGATTTGGTCTTTAACAAGGCTCAGGACATTGGATCTTTCAAACAATGCTTTCTCTGGATATTTACCACAAGGGATTTCAGCCATCCATAATCTAAAAGAGCTCAAGTTGCAGAACAACCAATTCTCAGGGCCATTGCCTGCAGACTTAGGATTATGCCTCCACTTGGCTACATTGGATATCAGCCGAAACCGTCTCACCGGGCCGCTACCAGAGTCAATGAGGCTCTTAACCTCCTTAACCTTCTTCAACATAGGATTCAACACATTTTCAGGTGAGGTACCACAGTGGATTGGGAACATGACAAGCTTGGAGTACATGGAATTCTCAAGCAATGGCTTCACTGGCAGTCTTCCCTTGGCAATGGGGGGACTAAGATCTGTGAAATACATGAGTTTTTCAAACAACAAGCTGTCGGGGAACATCCCAGAGACATTGATGGAATGTTCTAAGCTATCTGTGATCAACCTTGAAGGAAACAGCTTGAATGGAAGGGTGCCAGAAGGGTTGTTTGAACTGGGTTTGGAGGAGATGGATTTGTCTCAGAATGAGCTGATTGGTTCAATCCCAGTAGGATCGAGCAGGCTGTATGAGAAGCTAACAAGAATGGACCTGTCAAGGAACAGATTAGAAGGAAACTTTCCAGCAGAAATGGGTTTGTATAGAAATTTGAGGTACTTGAATCTGTCATGGAACAACTTCAAAGCAAAGATTCCACCAGAAATGGGGTTGTTTCAGAATTTGAATGTGTTGGATATTAGAAGCAGTGATCTGTATGGTTCAATCCCTGGAGAATTGTGTGATTCTGGGAGTTTGGGGATTCTTCAGCTTGATGGAAACTCTTTGATTGGTCCAATTCCTGATGAGATTGGGAATTGTCTCTCACTTTACTTGCTGCTTCCTGTTGGTGGCATTTTTCCAAGCTTGGATCAAAGTGCTTTGCAAGGGAACTTAGGCCTTTGCTCCCCTTTGCTTAAAGGACCTTGCAAAATGAATGTCCCTAAGCCCCTTGTTCTTGACCCCAATGCCTATCCCAACCAAATGGGTGGCCAAAGCAGCAGACACAACCCCTCACAATACTCTAATCCTTCCCCCCACCATGTTTTCTTCAGTGTCTCTGCCATTGTTGCTATTTCTGCTGCCACTTTGATTGCCCTTGGGGTGCTTGTAATCACCTTGCTCAATGTCTCCGCTCGGAGGAGATCGCTTGCCTTTGTCGATAATGCCTTGGAAAGCTGCTCGAGCTCTTCGAAATCAGGGACTGTCACTGCTGGTAAGCTTATTTTGTTTGATTCGAACTCGAGGGCCTCGCCGAATTGGGTTATTAACCATGAAGCCTTGCTGAACAAGGCCTCTGAGATTGGTGCTGGAGTTTTCGGGACAGTTTATAAGGTTTCATTGGGAGATGAAGGAGGAAGAGATGTAGCTATCAAGAAACTTGTGAAATCAAACATGATTCAAAATCCGGAAGATTTCGACCGGGAAATCCGAATCTTGGGGAAGGTTAAACACCCTAATTTGATCAGCTTAAAGGGTTACTACTGGACTGCTCAAACTCAGCTGTTGGTAATGGAGTATGCTAATAATGGAAGTCTTCAAACTCAACTACATGGAAGGCTTCCTTCAGCTCCACCATTGTCTTGGGATAACAGGTTCAAGATTGTGCTTGGGACAGCCAAAGGACTAGCACATTTACACCACTCATTCCGCCCGCCAATTGTCCACTACGATCTGAAGCCAAGTAACATTCTTCTCGACGAAAACTTCAACCCAAAGATCTCCGATTACGGACTCGCAAGACTGCTAACAAAGCTTGACAAACACATGGTGAACAACAGATTCCAAAGTGCATTGGGGTACGTTGCACCAGAACTAGCATGCCAGAGCATAAGGGTGAACGAGAAATGTGACGTACATGGGTTCGGGGTGATGATTCTGGAGATCGTGACGGGACGAAGGCCGGTGGAGTATGGAGAAGACAATGTGGTTATATTGACAGACCATGTGAGGTATTTGCTTGAGAGGGGGAATGTGTTGGATTGCGTTGATCCAAGCATGAGTCAATATTCAGAAGATGAAGTAGTGCCTATTCTCAAACTGGCTTTGGTTTGCACTTCTCAAATTCCTTCAAGTAGGCCTTCCATGGCTGAAGTTGTGCAGATTCTCCAAGTCATCAAAGCTCCACTTCCACAAAGAATACAAGGATTTTGA 2865 44.5 MAFLCFLALSLLGSMAILLQSCIAFNGVSPQLNDDILGLIVFKSDLHDPSSFLASWNEDDDSPCSWEFIKCNPINGRVSEVSIDGLGLSGRIGRGLEKLQHLKVLSLSGNNFTGNLSPQLVLPPSLDRVNFSRNSLSGRIPTSLISMSSIRFLDFSDNLFSGPLPDEMFLNCSSLHYLSLASNMLQGPVPNTLPTRCLYLNTLNLSANQFSGSLNFAPGIWSLTRLRTLDLSNNAFSGYLPQGISAIHNLKELKLQNNQFSGPLPADLGLCLHLATLDISRNRLTGPLPESMRLLTSLTFFNIGFNTFSGEVPQWIGNMTSLEYMEFSSNGFTGSLPLAMGGLRSVKYMSFSNNKLSGNIPETLMECSKLSVINLEGNSLNGRVPEGLFELGLEEMDLSQNELIGSIPVGSSRLYEKLTRMDLSRNRLEGNFPAEMGLYRNLRYLNLSWNNFKAKIPPEMGLFQNLNVLDIRSSDLYGSIPGELCDSGSLGILQLDGNSLIGPIPDEIGNCLSLYLLLPVGGIFPSLDQSALQGNLGLCSPLLKGPCKMNVPKPLVLDPNAYPNQMGGQSSRHNPSQYSNPSPHHVFFSVSAIVAISAATLIALGVLVITLLNVSARRRSLAFVDNALESCSSSSKSGTVTAGKLILFDSNSRASPNWVINHEALLNKASEIGAGVFGTVYKVSLGDEGGRDVAIKKLVKSNMIQNPEDFDREIRILGKVKHPNLISLKGYYWTAQTQLLVMEYANNGSLQTQLHGRLPSAPPLSWDNRFKIVLGTAKGLAHLHHSFRPPIVHYDLKPSNILLDENFNPKISDYGLARLLTKLDKHMVNNRFQSALGYVAPELACQSIRVNEKCDVHGFGVMILEIVTGRRPVEYGEDNVVILTDHVRYLLERGNVLDCVDPSMSQYSEDEVVPILKLALVCTSQIPSSRPSMAEVVQILQVIKAPLPQRIQGF 954
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 582004 586705 - Lsi07G000560.1 Lsi07g00056 666478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00056 954 CDD STKc_IRAK 672 941 - -
Lsi07g00056 954 PANTHER BNAA09G02190D PROTEIN 20 517 - -
Lsi07g00056 954 SUPERFAMILY L domain-like 51 403 - -
Lsi07g00056 954 Gene3D Phosphorylase Kinase; domain 1 653 744 - -
Lsi07g00056 954 Pfam Leucine rich repeat N-terminal domain 33 72 IPR013210 -
Lsi07g00056 954 ProSitePatterns Protein kinases ATP-binding region signature. 672 697 IPR017441 GO:0005524
Lsi07g00056 954 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 20 517 - -
Lsi07g00056 954 ProSiteProfiles Leucine-rich repeat profile. 441 463 IPR001611 GO:0005515
Lsi07g00056 954 SUPERFAMILY Outer arm dynein light chain 1 345 522 - -
Lsi07g00056 954 Pfam Protein kinase domain 668 938 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi07g00056 954 ProSitePatterns Serine/Threonine protein kinases active-site signature. 791 803 IPR008271 GO:0004672|GO:0006468
Lsi07g00056 954 Gene3D Ribonuclease Inhibitor 33 196 IPR032675 -
Lsi07g00056 954 Gene3D Transferase(Phosphotransferase) domain 1 745 950 - -
Lsi07g00056 954 SMART LRR_typ_2 147 171 IPR003591 -
Lsi07g00056 954 SMART LRR_typ_2 367 391 IPR003591 -
Lsi07g00056 954 SMART LRR_typ_2 223 246 IPR003591 -
Lsi07g00056 954 SMART LRR_typ_2 247 271 IPR003591 -
Lsi07g00056 954 SMART LRR_typ_2 99 123 IPR003591 -
Lsi07g00056 954 SMART LRR_typ_2 439 463 IPR003591 -
Lsi07g00056 954 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 518 952 - -
Lsi07g00056 954 SMART serkin_6 666 943 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi07g00056 954 PANTHER BNAA09G02190D PROTEIN 518 952 - -
Lsi07g00056 954 ProSiteProfiles Protein kinase domain profile. 666 943 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi07g00056 954 Gene3D Ribonuclease Inhibitor 197 272 IPR032675 -
Lsi07g00056 954 SUPERFAMILY Protein kinase-like (PK-like) 668 944 IPR011009 -
Lsi07g00056 954 Gene3D Ribonuclease Inhibitor 273 550 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01017 Lsi-Chr4:11513909 Lsi07g00056 Lsi-Chr7:582004 0 dispersed
Lsi07g00056 Lsi-Chr7:582004 Lsi07g01362 Lsi-Chr7:19814734 3.33E-168 dispersed
Lsi07g00056 Lsi-Chr7:582004 Lsi03g00261 Lsi-Chr3:3236746 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83757 PF00069 Pkinase 7.10E-45 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00056 - - mcha:111014681 1464.13