Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00089 ATGAAATTTTCACTTTCTCCCATTTTCAAATCCCCCGCCATTATTTCTCCCAGATTCTTCTCCACCGCCGTCTCCTCCTCCGCCATGTCCACTTCCGATCACTCTTCCCCTGCCTTCGACCGACCTCGCTCCGTCATCAAGAAGATTCTCGCTAAACTCCAGCACGAAGGCGACGGCGCCGTCGTTCGTCGAGGCATCGGAAGGAATGATTTGAAGAATCTAGATCCATTTCTTATGCTCGATGATTTCTCTGTCAGTCCGCCGGCTGGATTCCCTGATCATCCTCACAGAGGTTTCTTCCTTTCCATTGAATTTTCGCTGTTCAATAACAGAACTGGTTTTGAGACTGTGACGTATATGTTACAGGGAGGGATTACCCATCAAGATTTTGCTGGCCACAAGGGTACAATCAAAACAGGGGATGTCCAGTGGATGACAGCAGGAAGAGGAATAATTCATTCAGAAATGCCCGCTGGTGAAGGATCTCAAAAGGGTTTGCAGCTTTGGATAAATCTTGCATCCCATGACAAAATGATGGAGCCAAGGTATCAGGAGATCTCGAGCGACAACATTCCAAGAGCAGAGAAAGACGGTGTGGAAGTTCGTGTCATAGCAGGAGAGTCTATGGGAGTTCATTCTCCAATCTACACTAGAACTCCAACTATGTACCTTGATTTCACATTGAAACCAAGAGCTCAAGTGCATCAAAGCATTCCAGACACGTGGACGTCTTTCGTGTACATAATCGAGGGGGAAGGTGTGTTCGGGTCATCGAACTCGTCACGGGTGGCGGCTCATCATGTTCTAGTATTGGGAGGTGGAGATGGAGTAAGTGTGTGGAACAGATCTTCAAAGCCATTGAGGTTTGTTTTGATTGCAGGGAAGCCATTGAATGAACCAATTGTTCAATATGGACCATTTGTTATGAACTCACAATCTGAAATTGACCAAGCAATTGAGGACTATCATTATTCCAAAAATGGCTTTGAAATGGCAAAGTATTGGAGATCTCAGTAA 1017 45.72 MKFSLSPIFKSPAIISPRFFSTAVSSSAMSTSDHSSPAFDRPRSVIKKILAKLQHEGDGAVVRRGIGRNDLKNLDPFLMLDDFSVSPPAGFPDHPHRGFFLSIEFSLFNNRTGFETVTYMLQGGITHQDFAGHKGTIKTGDVQWMTAGRGIIHSEMPAGEGSQKGLQLWINLASHDKMMEPRYQEISSDNIPRAEKDGVEVRVIAGESMGVHSPIYTRTPTMYLDFTLKPRAQVHQSIPDTWTSFVYIIEGEGVFGSSNSSRVAAHHVLVLGGGDGVSVWNRSSKPLRFVLIAGKPLNEPIVQYGPFVMNSQSEIDQAIEDYHYSKNGFEMAKYWRSQ 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 986229 988652 + Lsi07G000890.1 Lsi07g00089 666511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00089 338 PANTHER PIRIN-RELATED 32 338 IPR012093 -
Lsi07g00089 338 Gene3D Jelly Rolls 56 323 IPR014710 -
Lsi07g00089 338 PANTHER PIRIN-LIKE PROTEIN 32 338 - -
Lsi07g00089 338 Pfam Pirin 112 170 IPR003829 -
Lsi07g00089 338 PIRSF Pirin 111 336 IPR012093 -
Lsi07g00089 338 PIRSF Pirin 41 100 IPR012093 -
Lsi07g00089 338 CDD cupin_pirin_C 220 296 - -
Lsi07g00089 338 Pfam Pirin C-terminal cupin domain 223 327 IPR008778 -
Lsi07g00089 338 Gene3D Jelly Rolls 192 297 IPR014710 -
Lsi07g00089 338 SUPERFAMILY RmlC-like cupins 43 336 IPR011051 -
Lsi07g00089 338 CDD cupin_pirin_N 60 172 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00531 Lsi-Chr5:6642421 Lsi07g00089 Lsi-Chr7:986229 3.28E-57 dispersed
Lsi07g00089 Lsi-Chr7:986229 Lsi02g01863 Lsi-Chr2:24382275 1.35E-129 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00089 K06911 - csv:101205861 601.282