Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi07g00089 | ATGAAATTTTCACTTTCTCCCATTTTCAAATCCCCCGCCATTATTTCTCCCAGATTCTTCTCCACCGCCGTCTCCTCCTCCGCCATGTCCACTTCCGATCACTCTTCCCCTGCCTTCGACCGACCTCGCTCCGTCATCAAGAAGATTCTCGCTAAACTCCAGCACGAAGGCGACGGCGCCGTCGTTCGTCGAGGCATCGGAAGGAATGATTTGAAGAATCTAGATCCATTTCTTATGCTCGATGATTTCTCTGTCAGTCCGCCGGCTGGATTCCCTGATCATCCTCACAGAGGTTTCTTCCTTTCCATTGAATTTTCGCTGTTCAATAACAGAACTGGTTTTGAGACTGTGACGTATATGTTACAGGGAGGGATTACCCATCAAGATTTTGCTGGCCACAAGGGTACAATCAAAACAGGGGATGTCCAGTGGATGACAGCAGGAAGAGGAATAATTCATTCAGAAATGCCCGCTGGTGAAGGATCTCAAAAGGGTTTGCAGCTTTGGATAAATCTTGCATCCCATGACAAAATGATGGAGCCAAGGTATCAGGAGATCTCGAGCGACAACATTCCAAGAGCAGAGAAAGACGGTGTGGAAGTTCGTGTCATAGCAGGAGAGTCTATGGGAGTTCATTCTCCAATCTACACTAGAACTCCAACTATGTACCTTGATTTCACATTGAAACCAAGAGCTCAAGTGCATCAAAGCATTCCAGACACGTGGACGTCTTTCGTGTACATAATCGAGGGGGAAGGTGTGTTCGGGTCATCGAACTCGTCACGGGTGGCGGCTCATCATGTTCTAGTATTGGGAGGTGGAGATGGAGTAAGTGTGTGGAACAGATCTTCAAAGCCATTGAGGTTTGTTTTGATTGCAGGGAAGCCATTGAATGAACCAATTGTTCAATATGGACCATTTGTTATGAACTCACAATCTGAAATTGACCAAGCAATTGAGGACTATCATTATTCCAAAAATGGCTTTGAAATGGCAAAGTATTGGAGATCTCAGTAA | 1017 | 45.72 | MKFSLSPIFKSPAIISPRFFSTAVSSSAMSTSDHSSPAFDRPRSVIKKILAKLQHEGDGAVVRRGIGRNDLKNLDPFLMLDDFSVSPPAGFPDHPHRGFFLSIEFSLFNNRTGFETVTYMLQGGITHQDFAGHKGTIKTGDVQWMTAGRGIIHSEMPAGEGSQKGLQLWINLASHDKMMEPRYQEISSDNIPRAEKDGVEVRVIAGESMGVHSPIYTRTPTMYLDFTLKPRAQVHQSIPDTWTSFVYIIEGEGVFGSSNSSRVAAHHVLVLGGGDGVSVWNRSSKPLRFVLIAGKPLNEPIVQYGPFVMNSQSEIDQAIEDYHYSKNGFEMAKYWRSQ | 338 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 986229 | 988652 | + | Lsi07G000890.1 | Lsi07g00089 | 666511 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi07g00089 | 338 | PANTHER | PIRIN-RELATED | 32 | 338 | IPR012093 | - | |
Lsi07g00089 | 338 | Gene3D | Jelly Rolls | 56 | 323 | IPR014710 | - | |
Lsi07g00089 | 338 | PANTHER | PIRIN-LIKE PROTEIN | 32 | 338 | - | - | |
Lsi07g00089 | 338 | Pfam | Pirin | 112 | 170 | IPR003829 | - | |
Lsi07g00089 | 338 | PIRSF | Pirin | 111 | 336 | IPR012093 | - | |
Lsi07g00089 | 338 | PIRSF | Pirin | 41 | 100 | IPR012093 | - | |
Lsi07g00089 | 338 | CDD | cupin_pirin_C | 220 | 296 | - | - | |
Lsi07g00089 | 338 | Pfam | Pirin C-terminal cupin domain | 223 | 327 | IPR008778 | - | |
Lsi07g00089 | 338 | Gene3D | Jelly Rolls | 192 | 297 | IPR014710 | - | |
Lsi07g00089 | 338 | SUPERFAMILY | RmlC-like cupins | 43 | 336 | IPR011051 | - | |
Lsi07g00089 | 338 | CDD | cupin_pirin_N | 60 | 172 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi05g00531 | Lsi-Chr5:6642421 | Lsi07g00089 | Lsi-Chr7:986229 | 3.28E-57 | dispersed | |
Lsi07g00089 | Lsi-Chr7:986229 | Lsi02g01863 | Lsi-Chr2:24382275 | 1.35E-129 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi07g00089 | K06911 | - | csv:101205861 | 601.282 |