Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi07g00099 | ATGGCTGATTCCCGAGCTCTTCCTCTTCGCTGTGGAGCAGGTATCGTCAAAAGTATCCGCTTAGAAAACTTCATGTGTCACAGCAACTTGTATATTGAATTTGGCGAGTGGCTCAATTTCATTACTGGACAGAACGGAAGTGGTAAGAGTGCTATACTGACTGCTTTATGTGTTGCATTCGGCTGTCGAGCTAAAGGAACCCAAAGGGCATCGACGTTGAAGGATTTTATTAAAACTGGTTGCAGTCATGCTGTCATCCATGTTGAATTGCAAAATAATGGGGAGGATGCTTTCAAGCATGGAATATATGGTGATGTTATAATCATAGAAAGAAGGATATCCGAAGCCACCAGTGCCATTGTTTTGAAGGATTCTCATGGAAAAAAGGTTGCCAGTCGGAGGGATGAACTACGAGAGCTAGTAGAACATTTTAATATAGATGTTGAGAATCCATGTGTAATAATGAGTCAGGACAAAAGTAGAGAGTTCCTGCATTCTGGGAACGACAAAGACAAATTTAAGTTCTTCTTCAAGGCAACTCTTCTTCAGCAAGTGGATGATCTGCTGAAAAACATTTTTGATCACTTGAGATCTGCGAATGCACTTGTTGATGACTTGGAGTCTACCATACGACCTGTAGAGAAGGAACTAAATGAGCTGCGAGGAAAAATTAAAAACATGGAGCATGTAGAAGAAATCTCTCAACAAGTCCAGCAATTAAAGAAAAAGCTTGCTTGGTCATGGGTATATGATGTAGACAAGCAGCTTCAGGAGCAAAGTGCAAAAATAGGAAAGCTCCAAGATCGCATTCCTATTTGTCGAGCAAAAATTGATCATCAACTGGGTCTGGCAGAAAAATTAAGAGAACGCTTTATTGAGAAAAAGACTCAAATTGCAAGCATGATGGAGAGAACTTCAGAAGTGAGAAGAATGAAGGATGAACTGCAGGCAACTCTTTCCTTGGCAACAAGAGAGAAGCTTGGACTTGAAGAGGAGCATGGCCGTAAAATAAACTACATCCAAAAGATGGTAAAGCGTGTTAGCCTGCTTGAGCAACAAGTTCAAGATATTCATGAGCAGCACATAAGAAATACGCAGGCTGAAGAATCTGAAATTGAGGAAAAGTTGAAGGAACTCAAATCGGAGACTGAAGCTGCTAAGTCAACAGTAATGAGGTTGAAAGAGGAGGAGAATGCCTTAATGGAAAGTCTCCACAGTGGGAGAAACGAAATAAAAAAGATTGTTGAAGAGATTGAAAGTTATGAGAAAAAGCATTATGAATTTTCTCACTCAATTCGAGAGCTAAGGCAGCATCAAACCAACAAGGTCACAGCTTTTGGAGGTGATAGAGTCATTCAATTATTACGTGCAATTGAGAGACAACATCAAAGATTCAAAAAACCTCCCATTGGTCCAATTGGTTCCCATCTGAATTTGGTCAATGGTGACATGTGGGCTCCTGCTGTTGAAAGTGCCATTGGGAGGTTGCTCAATGCTTTCATCGTGACTGATCATCAAGATTCTCTTCTTTTGAGAAGATGTGCAAATGAAGCTAATTATAGGCAACTCTCAATTATCATCTATGACTTTTCAAGACCAGTGTTAAATATTCCAGCTCACATGCTTCCTCAAACAAAGCACCCTACGACCCTTTCAGTAGTTCATTCTGAAAACCATACTGTCATCAATGTTTTGATAGATAAGGGTGATGCTGAGAGGCAAGTGCTTGTTAAAGATTATGATGTCGGTAAATCCGTCGCATTTGACCAACGTATCTCAAATCTCAAGGAGGTCTTTACATTAGATGGATACAAAATGTTTTCTCGAGGTTCTGTTCAGACAATTCTTCCCCCAGTTAGAAGGCCCAGAAGTGGCAGACTTTGTAGTTCCTTTGAAGACCAAATTAAAAGTCTTGAAAAAGATGCATTGAATGTAAAGCAAGAAGCTGAACAATGTAGGAAGAGGAAGAGAGTTTCAGAAGAACAACTTCGGGATCTTGAAGACAACCTAAGCAATGCGAAGAGGAGATGTCGGAGTGCGGAACGGTTTTTAATGTCCAAAAATTTGGAGCTGCAAGATTTACGGAAGTCACAAGTTGCTGAGACTAGCTCATTGCCTTCATCAAATGTGGATGAGCTTCATCAAGAAATTTCTAAAATCGAAGAGGAGATACAAGAGAATAAGTTGCTTTTGGAAAAGTTTAGAGTTAGGATGAAAGAAGCGGAAGCAAAGGCAAAAGAGCTTAAAGTATCATTTGAGAATCTCTGTGAAAAGGTCATTCCTACCTCTACGGATAGTTCATTGAACATTTTGCTGCTCATTATTAGTTCATTAATGTATAAGAATATAAAAATGTCACAGGAGAAGGATCATTATGAAGGTATTATGACTAACAAGGTACTTTTTGATATTAAAGAGGCAGAGAAACAATTTCAGGAGCTTGAGCGCCACCGAAAGGAGAGCTACAGTAAGGCTTCAATAATATGTCCTGAGAGTGAAATTGAGGCTTTAGTCTCCAAGAAAGCATTCTTGCTTGTAACCTACTCTCGAATTAAATTACAGGCTTGCCAGAAAGCTCTTGAACTACGGTGGAACAAGTTTGAAAGGAATGCTAGTCTTTTGAAGCGCCAATTGACTTGGCAATTTAATGGCCATTTAAGAAAAAAAGGGATCAGCGGACATATAAAAGTTAATTATGAGGAAAAGACCCTCTCAGTTGAGGTGAAGATGCCCCAAGATGCATCCAGCAGTTCTGTTCGTGATACCCGTGGACTTTCAGGCGGAGAACGGTCATTTTCAACTCTATGCTTTGCTTTGGCATTACACGAAATGACAGAAGCCCCATTTCGAGCAATGGATGAGTTTGATGTGTTTATGGATGCAGTAAGTCGAAAAATTAGCTTAGACACTCTTGTGGATTTTGCATTGGCACAAGGCTCCCAATGGATATTTATCACACCTCATGACATCGGCATGGTAAAACAAGGAGAACGAATCAAGAAGCAGCAAATGGCAGCTCCTCGATCATGA | 3030 | 40.1 | MADSRALPLRCGAGIVKSIRLENFMCHSNLYIEFGEWLNFITGQNGSGKSAILTALCVAFGCRAKGTQRASTLKDFIKTGCSHAVIHVELQNNGEDAFKHGIYGDVIIIERRISEATSAIVLKDSHGKKVASRRDELRELVEHFNIDVENPCVIMSQDKSREFLHSGNDKDKFKFFFKATLLQQVDDLLKNIFDHLRSANALVDDLESTIRPVEKELNELRGKIKNMEHVEEISQQVQQLKKKLAWSWVYDVDKQLQEQSAKIGKLQDRIPICRAKIDHQLGLAEKLRERFIEKKTQIASMMERTSEVRRMKDELQATLSLATREKLGLEEEHGRKINYIQKMVKRVSLLEQQVQDIHEQHIRNTQAEESEIEEKLKELKSETEAAKSTVMRLKEEENALMESLHSGRNEIKKIVEEIESYEKKHYEFSHSIRELRQHQTNKVTAFGGDRVIQLLRAIERQHQRFKKPPIGPIGSHLNLVNGDMWAPAVESAIGRLLNAFIVTDHQDSLLLRRCANEANYRQLSIIIYDFSRPVLNIPAHMLPQTKHPTTLSVVHSENHTVINVLIDKGDAERQVLVKDYDVGKSVAFDQRISNLKEVFTLDGYKMFSRGSVQTILPPVRRPRSGRLCSSFEDQIKSLEKDALNVKQEAEQCRKRKRVSEEQLRDLEDNLSNAKRRCRSAERFLMSKNLELQDLRKSQVAETSSLPSSNVDELHQEISKIEEEIQENKLLLEKFRVRMKEAEAKAKELKVSFENLCEKVIPTSTDSSLNILLLIISSLMYKNIKMSQEKDHYEGIMTNKVLFDIKEAEKQFQELERHRKESYSKASIICPESEIEALVSKKAFLLVTYSRIKLQACQKALELRWNKFERNASLLKRQLTWQFNGHLRKKGISGHIKVNYEEKTLSVEVKMPQDASSSSVRDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAVSRKISLDTLVDFALAQGSQWIFITPHDIGMVKQGERIKKQQMAAPRS | 1009 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 1115093 | 1129987 | - | Lsi07G000990.1 | Lsi07g00099 | 666521 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi07g00099 | 1009 | Coils | Coil | 710 | 758 | - | - | |
Lsi07g00099 | 1009 | PANTHER | STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6 | 9 | 837 | - | - | |
Lsi07g00099 | 1009 | Gene3D | - | 773 | 1004 | IPR027417 | - | |
Lsi07g00099 | 1009 | Coils | Coil | 804 | 824 | - | - | |
Lsi07g00099 | 1009 | Coils | Coil | 203 | 223 | - | - | |
Lsi07g00099 | 1009 | PANTHER | STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 6B | 9 | 837 | IPR027132 | GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915 | |
Lsi07g00099 | 1009 | PANTHER | STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 6B | 840 | 1009 | IPR027132 | GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915 | |
Lsi07g00099 | 1009 | SUPERFAMILY | Smc hinge domain | 423 | 611 | IPR036277 | GO:0005515|GO:0005524|GO:0005694|GO:0051276 | |
Lsi07g00099 | 1009 | CDD | ABC_SMC6_euk | 913 | 1009 | - | - | |
Lsi07g00099 | 1009 | PANTHER | STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6 | 840 | 1009 | - | - | |
Lsi07g00099 | 1009 | Coils | Coil | 628 | 683 | - | - | |
Lsi07g00099 | 1009 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 16 | 999 | IPR027417 | - | |
Lsi07g00099 | 1009 | Gene3D | - | 15 | 214 | IPR027417 | - | |
Lsi07g00099 | 1009 | Coils | Coil | 404 | 424 | - | - | |
Lsi07g00099 | 1009 | Coils | Coil | 362 | 396 | - | - | |
Lsi07g00099 | 1009 | Pfam | RecF/RecN/SMC N terminal domain | 16 | 1001 | IPR003395 | - | |
Lsi07g00099 | 1009 | Coils | Coil | 340 | 360 | - | - | |
Lsi07g00099 | 1009 | CDD | ABC_SMC6_euk | 16 | 168 | - | - | |
Lsi07g00099 | 1009 | Coils | Coil | 284 | 304 | - | - | |
Lsi07g00099 | 1009 | Coils | Coil | 312 | 332 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi02g02546 | Lsi-Chr2:31920606 | Lsi07g00099 | Lsi-Chr7:1115093 | 5.38E-15 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi07g00099 | K22804 | - | csv:101208493 | 1731.46 |