Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00099 ATGGCTGATTCCCGAGCTCTTCCTCTTCGCTGTGGAGCAGGTATCGTCAAAAGTATCCGCTTAGAAAACTTCATGTGTCACAGCAACTTGTATATTGAATTTGGCGAGTGGCTCAATTTCATTACTGGACAGAACGGAAGTGGTAAGAGTGCTATACTGACTGCTTTATGTGTTGCATTCGGCTGTCGAGCTAAAGGAACCCAAAGGGCATCGACGTTGAAGGATTTTATTAAAACTGGTTGCAGTCATGCTGTCATCCATGTTGAATTGCAAAATAATGGGGAGGATGCTTTCAAGCATGGAATATATGGTGATGTTATAATCATAGAAAGAAGGATATCCGAAGCCACCAGTGCCATTGTTTTGAAGGATTCTCATGGAAAAAAGGTTGCCAGTCGGAGGGATGAACTACGAGAGCTAGTAGAACATTTTAATATAGATGTTGAGAATCCATGTGTAATAATGAGTCAGGACAAAAGTAGAGAGTTCCTGCATTCTGGGAACGACAAAGACAAATTTAAGTTCTTCTTCAAGGCAACTCTTCTTCAGCAAGTGGATGATCTGCTGAAAAACATTTTTGATCACTTGAGATCTGCGAATGCACTTGTTGATGACTTGGAGTCTACCATACGACCTGTAGAGAAGGAACTAAATGAGCTGCGAGGAAAAATTAAAAACATGGAGCATGTAGAAGAAATCTCTCAACAAGTCCAGCAATTAAAGAAAAAGCTTGCTTGGTCATGGGTATATGATGTAGACAAGCAGCTTCAGGAGCAAAGTGCAAAAATAGGAAAGCTCCAAGATCGCATTCCTATTTGTCGAGCAAAAATTGATCATCAACTGGGTCTGGCAGAAAAATTAAGAGAACGCTTTATTGAGAAAAAGACTCAAATTGCAAGCATGATGGAGAGAACTTCAGAAGTGAGAAGAATGAAGGATGAACTGCAGGCAACTCTTTCCTTGGCAACAAGAGAGAAGCTTGGACTTGAAGAGGAGCATGGCCGTAAAATAAACTACATCCAAAAGATGGTAAAGCGTGTTAGCCTGCTTGAGCAACAAGTTCAAGATATTCATGAGCAGCACATAAGAAATACGCAGGCTGAAGAATCTGAAATTGAGGAAAAGTTGAAGGAACTCAAATCGGAGACTGAAGCTGCTAAGTCAACAGTAATGAGGTTGAAAGAGGAGGAGAATGCCTTAATGGAAAGTCTCCACAGTGGGAGAAACGAAATAAAAAAGATTGTTGAAGAGATTGAAAGTTATGAGAAAAAGCATTATGAATTTTCTCACTCAATTCGAGAGCTAAGGCAGCATCAAACCAACAAGGTCACAGCTTTTGGAGGTGATAGAGTCATTCAATTATTACGTGCAATTGAGAGACAACATCAAAGATTCAAAAAACCTCCCATTGGTCCAATTGGTTCCCATCTGAATTTGGTCAATGGTGACATGTGGGCTCCTGCTGTTGAAAGTGCCATTGGGAGGTTGCTCAATGCTTTCATCGTGACTGATCATCAAGATTCTCTTCTTTTGAGAAGATGTGCAAATGAAGCTAATTATAGGCAACTCTCAATTATCATCTATGACTTTTCAAGACCAGTGTTAAATATTCCAGCTCACATGCTTCCTCAAACAAAGCACCCTACGACCCTTTCAGTAGTTCATTCTGAAAACCATACTGTCATCAATGTTTTGATAGATAAGGGTGATGCTGAGAGGCAAGTGCTTGTTAAAGATTATGATGTCGGTAAATCCGTCGCATTTGACCAACGTATCTCAAATCTCAAGGAGGTCTTTACATTAGATGGATACAAAATGTTTTCTCGAGGTTCTGTTCAGACAATTCTTCCCCCAGTTAGAAGGCCCAGAAGTGGCAGACTTTGTAGTTCCTTTGAAGACCAAATTAAAAGTCTTGAAAAAGATGCATTGAATGTAAAGCAAGAAGCTGAACAATGTAGGAAGAGGAAGAGAGTTTCAGAAGAACAACTTCGGGATCTTGAAGACAACCTAAGCAATGCGAAGAGGAGATGTCGGAGTGCGGAACGGTTTTTAATGTCCAAAAATTTGGAGCTGCAAGATTTACGGAAGTCACAAGTTGCTGAGACTAGCTCATTGCCTTCATCAAATGTGGATGAGCTTCATCAAGAAATTTCTAAAATCGAAGAGGAGATACAAGAGAATAAGTTGCTTTTGGAAAAGTTTAGAGTTAGGATGAAAGAAGCGGAAGCAAAGGCAAAAGAGCTTAAAGTATCATTTGAGAATCTCTGTGAAAAGGTCATTCCTACCTCTACGGATAGTTCATTGAACATTTTGCTGCTCATTATTAGTTCATTAATGTATAAGAATATAAAAATGTCACAGGAGAAGGATCATTATGAAGGTATTATGACTAACAAGGTACTTTTTGATATTAAAGAGGCAGAGAAACAATTTCAGGAGCTTGAGCGCCACCGAAAGGAGAGCTACAGTAAGGCTTCAATAATATGTCCTGAGAGTGAAATTGAGGCTTTAGTCTCCAAGAAAGCATTCTTGCTTGTAACCTACTCTCGAATTAAATTACAGGCTTGCCAGAAAGCTCTTGAACTACGGTGGAACAAGTTTGAAAGGAATGCTAGTCTTTTGAAGCGCCAATTGACTTGGCAATTTAATGGCCATTTAAGAAAAAAAGGGATCAGCGGACATATAAAAGTTAATTATGAGGAAAAGACCCTCTCAGTTGAGGTGAAGATGCCCCAAGATGCATCCAGCAGTTCTGTTCGTGATACCCGTGGACTTTCAGGCGGAGAACGGTCATTTTCAACTCTATGCTTTGCTTTGGCATTACACGAAATGACAGAAGCCCCATTTCGAGCAATGGATGAGTTTGATGTGTTTATGGATGCAGTAAGTCGAAAAATTAGCTTAGACACTCTTGTGGATTTTGCATTGGCACAAGGCTCCCAATGGATATTTATCACACCTCATGACATCGGCATGGTAAAACAAGGAGAACGAATCAAGAAGCAGCAAATGGCAGCTCCTCGATCATGA 3030 40.1 MADSRALPLRCGAGIVKSIRLENFMCHSNLYIEFGEWLNFITGQNGSGKSAILTALCVAFGCRAKGTQRASTLKDFIKTGCSHAVIHVELQNNGEDAFKHGIYGDVIIIERRISEATSAIVLKDSHGKKVASRRDELRELVEHFNIDVENPCVIMSQDKSREFLHSGNDKDKFKFFFKATLLQQVDDLLKNIFDHLRSANALVDDLESTIRPVEKELNELRGKIKNMEHVEEISQQVQQLKKKLAWSWVYDVDKQLQEQSAKIGKLQDRIPICRAKIDHQLGLAEKLRERFIEKKTQIASMMERTSEVRRMKDELQATLSLATREKLGLEEEHGRKINYIQKMVKRVSLLEQQVQDIHEQHIRNTQAEESEIEEKLKELKSETEAAKSTVMRLKEEENALMESLHSGRNEIKKIVEEIESYEKKHYEFSHSIRELRQHQTNKVTAFGGDRVIQLLRAIERQHQRFKKPPIGPIGSHLNLVNGDMWAPAVESAIGRLLNAFIVTDHQDSLLLRRCANEANYRQLSIIIYDFSRPVLNIPAHMLPQTKHPTTLSVVHSENHTVINVLIDKGDAERQVLVKDYDVGKSVAFDQRISNLKEVFTLDGYKMFSRGSVQTILPPVRRPRSGRLCSSFEDQIKSLEKDALNVKQEAEQCRKRKRVSEEQLRDLEDNLSNAKRRCRSAERFLMSKNLELQDLRKSQVAETSSLPSSNVDELHQEISKIEEEIQENKLLLEKFRVRMKEAEAKAKELKVSFENLCEKVIPTSTDSSLNILLLIISSLMYKNIKMSQEKDHYEGIMTNKVLFDIKEAEKQFQELERHRKESYSKASIICPESEIEALVSKKAFLLVTYSRIKLQACQKALELRWNKFERNASLLKRQLTWQFNGHLRKKGISGHIKVNYEEKTLSVEVKMPQDASSSSVRDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAVSRKISLDTLVDFALAQGSQWIFITPHDIGMVKQGERIKKQQMAAPRS 1009
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1115093 1129987 - Lsi07G000990.1 Lsi07g00099 666521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00099 1009 Coils Coil 710 758 - -
Lsi07g00099 1009 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6 9 837 - -
Lsi07g00099 1009 Gene3D - 773 1004 IPR027417 -
Lsi07g00099 1009 Coils Coil 804 824 - -
Lsi07g00099 1009 Coils Coil 203 223 - -
Lsi07g00099 1009 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 6B 9 837 IPR027132 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
Lsi07g00099 1009 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 6B 840 1009 IPR027132 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
Lsi07g00099 1009 SUPERFAMILY Smc hinge domain 423 611 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Lsi07g00099 1009 CDD ABC_SMC6_euk 913 1009 - -
Lsi07g00099 1009 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6 840 1009 - -
Lsi07g00099 1009 Coils Coil 628 683 - -
Lsi07g00099 1009 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 16 999 IPR027417 -
Lsi07g00099 1009 Gene3D - 15 214 IPR027417 -
Lsi07g00099 1009 Coils Coil 404 424 - -
Lsi07g00099 1009 Coils Coil 362 396 - -
Lsi07g00099 1009 Pfam RecF/RecN/SMC N terminal domain 16 1001 IPR003395 -
Lsi07g00099 1009 Coils Coil 340 360 - -
Lsi07g00099 1009 CDD ABC_SMC6_euk 16 168 - -
Lsi07g00099 1009 Coils Coil 284 304 - -
Lsi07g00099 1009 Coils Coil 312 332 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02546 Lsi-Chr2:31920606 Lsi07g00099 Lsi-Chr7:1115093 5.38E-15 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00099 K22804 - csv:101208493 1731.46