Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00099 ATGGCTGATTCCCGAGCTCTTCCTCTTCGCTGTGGAGCAGGTATCGTCAAAAGTATCCGCTTAGAAAACTTCATGTGTCACAGCAACTTGTATATTGAATTTGGCGAGTGGCTCAATTTCATTACTGGACAGAACGGAAGTGGTAAGAGTGCTATACTGACTGCTTTATGTGTTGCATTCGGCTGTCGAGCTAAAGGAACCCAAAGGGCATCGACGTTGAAGGATTTTATTAAAACTGGTTGCAGTCATGCTGTCATCCATGTTGAATTGCAAAATAATGGGGAGGATGCTTTCAAGCATGGAATATATGGTGATGTTATAATCATAGAAAGAAGGATATCCGAAGCCACCAGTGCCATTGTTTTGAAGGATTCTCATGGAAAAAAGGTTGCCAGTCGGAGGGATGAACTACGAGAGCTAGTAGAACATTTTAATATAGATGTTGAGAATCCATGTGTAATAATGAGTCAGGACAAAAGTAGAGAGTTCCTGCATTCTGGGAACGACAAAGACAAATTTAAGTTCTTCTTCAAGGCAACTCTTCTTCAGCAAGTGGATGATCTGCTGAAAAACATTTTTGATCACTTGAGATCTGCGAATGCACTTGTTGATGACTTGGAGTCTACCATACGACCTGTAGAGAAGGAACTAAATGAGCTGCGAGGAAAAATTAAAAACATGGAGCATGTAGAAGAAATCTCTCAACAAGTCCAGCAATTAAAGAAAAAGCTTGCTTGGTCATGGGTATATGATGTAGACAAGCAGCTTCAGGAGCAAAGTGCAAAAATAGGAAAGCTCCAAGATCGCATTCCTATTTGTCGAGCAAAAATTGATCATCAACTGGGTCTGGCAGAAAAATTAAGAGAACGCTTTATTGAGAAAAAGACTCAAATTGCAAGCATGATGGAGAGAACTTCAGAAGTGAGAAGAATGAAGGATGAACTGCAGGCAACTCTTTCCTTGGCAACAAGAGAGAAGCTTGGACTTGAAGAGGAGCATGGCCGTAAAATAAACTACATCCAAAAGATGGTAAAGCGTGTTAGCCTGCTTGAGCAACAAGTTCAAGATATTCATGAGCAGCACATAAGAAATACGCAGGCTGAAGAATCTGAAATTGAGGAAAAGTTGAAGGAACTCAAATCGGAGACTGAAGCTGCTAAGTCAACAGTAATGAGGTTGAAAGAGGAGGAGAATGCCTTAATGGAAAGTCTCCACAGTGGGAGAAACGAAATAAAAAAGATTGTTGAAGAGATTGAAAGTTATGAGAAAAAGCATTATGAATTTTCTCACTCAATTCGAGAGCTAAGGCAGCATCAAACCAACAAGGTCACAGCTTTTGGAGGTGATAGAGTCATTCAATTATTACGTGCAATTGAGAGACAACATCAAAGATTCAAAAAACCTCCCATTGGTCCAATTGGTTCCCATCTGAATTTGGTCAATGGTGACATGTGGGCTCCTGCTGTTGAAAGTGCCATTGGGAGGTTGCTCAATGCTTTCATCGTGACTGATCATCAAGATTCTCTTCTTTTGAGAAGATGTGCAAATGAAGCTAATTATAGGCAACTCTCAATTATCATCTATGACTTTTCAAGACCAGTGTTAAATATTCCAGCTCACATGCTTCCTCAAACAAAGCACCCTACGACCCTTTCAGTAGTTCATTCTGAAAACCATACTGTCATCAATGTTTTGATAGATAAGGGTGATGCTGAGAGGCAAGTGCTTGTTAAAGATTATGATGTCGGTAAATCCGTCGCATTTGACCAACGTATCTCAAATCTCAAGGAGGTCTTTACATTAGATGGATACAAAATGTTTTCTCGAGGTTCTGTTCAGACAATTCTTCCCCCAGTTAGAAGGCCCAGAAGTGGCAGACTTTGTAGTTCCTTTGAAGACCAAATTAAAAGTCTTGAAAAAGATGCATTGAATGTAAAGCAAGAAGCTGAACAATGTAGGAAGAGGAAGAGAGTTTCAGAAGAACAACTTCGGGATCTTGAAGACAACCTAAGCAATGCGAAGAGGAGATGTCGGAGTGCGGAACGGTTTTTAATGTCCAAAAATTTGGAGCTGCAAGATTTACGGAAGTCACAAGTTGCTGAGACTAGCTCATTGCCTTCATCAAATGTGGATGAGCTTCATCAAGAAATTTCTAAAATCGAAGAGGAGATACAAGAGAATAAGTTGCTTTTGGAAAAGTTTAGAGTTAGGATGAAAGAAGCGGAAGCAAAGGCAAAAGAGCTTAAAGTATCATTTGAGAATCTCTGTGAAAAGGTCATTCCTACCTCTACGGATAGTTCATTGAACATTTTGCTGCTCATTATTAGTTCATTAATGTATAAGAATATAAAAATGTCACAGGAGAAGGATCATTATGAAGGTATTATGACTAACAAGGTACTTTTTGATATTAAAGAGGCAGAGAAACAATTTCAGGAGCTTGAGCGCCACCGAAAGGAGAGCTACAGTAAGGCTTCAATAATATGTCCTGAGAGTGAAATTGAGGCTTTAGTCTCCAAGAAAGCATTCTTGCTTGTAACCTACTCTCGAATTAAATTACAGGCTTGCCAGAAAGCTCTTGAACTACGGTGGAACAAGTTTGAAAGGAATGCTAGTCTTTTGAAGCGCCAATTGACTTGGCAATTTAATGGCCATTTAAGAAAAAAAGGGATCAGCGGACATATAAAAGTTAATTATGAGGAAAAGACCCTCTCAGTTGAGGTGAAGATGCCCCAAGATGCATCCAGCAGTTCTGTTCGTGATACCCGTGGACTTTCAGGCGGAGAACGGTCATTTTCAACTCTATGCTTTGCTTTGGCATTACACGAAATGACAGAAGCCCCATTTCGAGCAATGGATGAGTTTGATGTGTTTATGGATGCAGTAAGTCGAAAAATTAGCTTAGACACTCTTGTGGATTTTGCATTGGCACAAGGCTCCCAATGGATATTTATCACACCTCATGACATCGGCATGGTAAAACAAGGAGAACGAATCAAGAAGCAGCAAATGGCAGCTCCTCGATCATGA 3030 40.1 MADSRALPLRCGAGIVKSIRLENFMCHSNLYIEFGEWLNFITGQNGSGKSAILTALCVAFGCRAKGTQRASTLKDFIKTGCSHAVIHVELQNNGEDAFKHGIYGDVIIIERRISEATSAIVLKDSHGKKVASRRDELRELVEHFNIDVENPCVIMSQDKSREFLHSGNDKDKFKFFFKATLLQQVDDLLKNIFDHLRSANALVDDLESTIRPVEKELNELRGKIKNMEHVEEISQQVQQLKKKLAWSWVYDVDKQLQEQSAKIGKLQDRIPICRAKIDHQLGLAEKLRERFIEKKTQIASMMERTSEVRRMKDELQATLSLATREKLGLEEEHGRKINYIQKMVKRVSLLEQQVQDIHEQHIRNTQAEESEIEEKLKELKSETEAAKSTVMRLKEEENALMESLHSGRNEIKKIVEEIESYEKKHYEFSHSIRELRQHQTNKVTAFGGDRVIQLLRAIERQHQRFKKPPIGPIGSHLNLVNGDMWAPAVESAIGRLLNAFIVTDHQDSLLLRRCANEANYRQLSIIIYDFSRPVLNIPAHMLPQTKHPTTLSVVHSENHTVINVLIDKGDAERQVLVKDYDVGKSVAFDQRISNLKEVFTLDGYKMFSRGSVQTILPPVRRPRSGRLCSSFEDQIKSLEKDALNVKQEAEQCRKRKRVSEEQLRDLEDNLSNAKRRCRSAERFLMSKNLELQDLRKSQVAETSSLPSSNVDELHQEISKIEEEIQENKLLLEKFRVRMKEAEAKAKELKVSFENLCEKVIPTSTDSSLNILLLIISSLMYKNIKMSQEKDHYEGIMTNKVLFDIKEAEKQFQELERHRKESYSKASIICPESEIEALVSKKAFLLVTYSRIKLQACQKALELRWNKFERNASLLKRQLTWQFNGHLRKKGISGHIKVNYEEKTLSVEVKMPQDASSSSVRDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAVSRKISLDTLVDFALAQGSQWIFITPHDIGMVKQGERIKKQQMAAPRS 1009
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1115093 1129987 - Lsi07G000990.1 Lsi07g00099 666521

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00099 1009 Coils Coil 710 758 - -
Lsi07g00099 1009 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6 9 837 - -
Lsi07g00099 1009 Gene3D - 773 1004 IPR027417 -
Lsi07g00099 1009 Coils Coil 804 824 - -
Lsi07g00099 1009 Coils Coil 203 223 - -
Lsi07g00099 1009 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 6B 9 837 IPR027132 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
Lsi07g00099 1009 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 6B 840 1009 IPR027132 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
Lsi07g00099 1009 SUPERFAMILY Smc hinge domain 423 611 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Lsi07g00099 1009 CDD ABC_SMC6_euk 913 1009 - -
Lsi07g00099 1009 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6 840 1009 - -
Lsi07g00099 1009 Coils Coil 628 683 - -
Lsi07g00099 1009 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 16 999 IPR027417 -
Lsi07g00099 1009 Gene3D - 15 214 IPR027417 -
Lsi07g00099 1009 Coils Coil 404 424 - -
Lsi07g00099 1009 Coils Coil 362 396 - -
Lsi07g00099 1009 Pfam RecF/RecN/SMC N terminal domain 16 1001 IPR003395 -
Lsi07g00099 1009 Coils Coil 340 360 - -
Lsi07g00099 1009 CDD ABC_SMC6_euk 16 168 - -
Lsi07g00099 1009 Coils Coil 284 304 - -
Lsi07g00099 1009 Coils Coil 312 332 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00099 K22804 SMC6; structural maintenance of chromosomes protein 6 - csv:101208493 1731.46
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02546 Lsi-Chr2:31920606 Lsi07g00099 Lsi-Chr7:1115093 5.38E-15 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g373 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi07g00099 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy07g01392 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi02g02546 . 4 877 Structural Maintenance of Chromosomes family AT5G15920 65.8 0.0e+00 1094.0
Lsi07g00099 . 13 1009 Structural Maintenance of Chromosomes family AT5G07660 59.8 0.0e+00 1140.6
Lsi07g00099 . 10 1009 Structural Maintenance of Chromosomes family AT5G61460 61.6 0.0e+00 1185.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010088 0 2 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 3 1 1 1 1 1 2 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi07g00099 Lsi_Chr07 FPKM 0.179916 0.0 0.0 0.0 0.0 0.0 0.0 11.14342 12.932693 10.86173