Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00100 ATGAACCCAGATTCTAGTTTCCTTTTGTTTGTTGTTGTTGTAGTTCTTCTTCTGATCACCATCAACCCTTTTCTTCTTGAGGTTCTTTCTGCAACTCCAACAGCTTTACCACTTCAACTTCTCTCTCTGCTTTCCTTAAAATCCTCCATTAAAGACCCCTTTTCAAGCTTCCATGACTGGGATCCTACACCAACCTTCACCAGAGCTGATTATCAAGACCCAATTTGGTGTTCATGGTCTGGAATTGAATGTCATCAAAACTCAGCTGAAATCACTTCCTTGGACTTGTCTCAACGTAATCTCTCTGGCTACATTCCCTCTGAAATTAAGTACTTGACGAGCTTGATCCACTTGAATTTGAGTGGCAACAGCTTTCTTGGGCCTTTCCCTACCGCCATTTTCGAACTTCCTCAGCTCAGAACTCTGGATATCAGTCATAATAATTTCAGCTCCATTTTCCCACCTGGGATTTCCAAGCTCAAGTTCTTAAACGTCTTCAATGCCTACAGTAATAATTTCACTGGCCCCTTACCCCAAGACCTCGCCCATCTCCATTTTCTAGAACGACTCAACCTCGGAGGAAGCTACTTCAGTGGAAGTATTCCGGGGAGCTATGGCGGGTTTTCACGGTTGAAATATTTGCATTTGGCTGGAAATGCTCTTGACGGACAAATTCCAGAACAGCTTGCGTACTTAAACCAACTAGAGAGAATGGAGATCGGTTACAATACCTTCTCCGGCGGGATTCCGTCGGAATTTCCTTTGTTGTTGAATCTGAAATACTTGGATATCGCCGGAGCGAATATCTCCGGGACTCTGCCACAGGACATTGGGAACATGACGAAGCTTCAAAATCTGCTTCTCTTCAAGAATCGAATCAGCGGAGAAATTCCTGCAAGTTTAGGGAAATTAGTAGCGGTCAAGGAGCTTGATTTGTCTGAGAATGAACTTACCGGAACGATTCCGTCGGATTTGTATGATCTGAAGGAAATGACGGAGTTGAGTTTGATGGGGAACGATCTGAGTGGGGAAATTCCACAAGCACTTGGCGATCTTCCAAATCTCGCCACTTTGCAATTATGGAACAATTCGTTCACAGGGCCACTCCCTCAAAAACTGGGTTCCAACGACAAATTGCTTCACGTTGATGTTTCGTCGAATATGCTCACTGGTCCGATTCCCCCAGATCTCTGCCACGGTAATAAGCTCTTCAAGCTCATTCTCTTTTCCAATAATTTAGGGCACGAACTTCCCGCCTCTTTAGCCAACTGCACGTCTCTCACTCGCTTTCGAATCCAAAATAACCGCCTGAACGGCTCGATTCCTTACGGTTTCGGACTGCTGGAGAATCTGACATTTGCCGACTTCAGCAACAATAACTTCTCCGGTGAGATTCCGGCGGATTTTGGTAATGCGGTTAGGTTACAGTACTTGAACATTTCACAGAACGCCTTCGGAACTTCCTTGCCGGAGAATATCTGGAACTCGACGAGGTTAGAGATCTTATCAGCGAGTTCTTCAAAAATCATCGGCAACATCCCGGATTTCATCGGCTGTAGGTCCATCTACAAGATCGAACTCCAGGACAATAACTTAAACAGCAGTATTCCATGGACAATCGGCCACTGCGAGAAATTACTCACTCTGAATTTAAGCCGGAATTCCTTAACCGGCATTATTCCATGGGAGATTTCAACGCTGTCGTGGATCACCGCCATTGATCTTTCTCGTAACTTCCTCACAGGTACAATTCCTTCAAATTTCCAAAACTGTAGCACAATCGAAAGCTTCAACGTATCATACAACATGCTCACCGGCCCTATTCCATCGACGGGAACGATCTTTCCTGCATTACACCCGTCATCGTTCACCGGCAACGATGGACTCTGCGGCGAGATTCTTTCAAAACCATGCGCCGCAGACACACTGACCACCGGCGCCATAGAGGTCCGGCAGCAGCAGCCGCGGCGCAGGGCAGGAGCAATAGTGTGGATAATGGCGGCAGCATTCGGAATTGGACTGTTCGTATTAGTGGCCGGAACGCGGTGTTTTCAGGCGAACTACAACCGTCGATTCGGTGGTGGCGACGAGGAAATTGGACCGTGGAAATTAACCGCCTTTCAACGGTTGAACTTCACGGCGGAGGAGGTATTGGAATGTTTGGCAATGACGGATAAAATACTAGGAATGGGGTCGACGGGAACAGTTTACAAAGCGGAGATGCCAGGTGGCGAGATCATAGCGGTGAAGAAACTATGGGGGAAGTACAAAGAGAACATCCGACGGCGGAGAGGGGTTCTGGCGGAAGTGGATGTACTTGGGAACGTGCGGCACCGGAACATAGTAAGATTGTTAGGGTGCTGCAGCAACAGGGAGTGTACGATGCTGCTCTACGAGTATATGCCCAATGGTAATTTGGATGATTTACTGCACGGTAAAAACAAGGGTGAAAATTTAGGCGCTGATTGGATGACCAGGTATAAAATTGCACTGGGTGTCGCACAGGGGATTTGTTATCTTCACCATGACTGTGATCCCGTCATCGTCCACCGCGATCTCAAGCCCAGTAATATTTTGTTGGACGGTGAGATGGAGGCCAGAGTAGCAGATTTTGGCGTCGCTAAATTGATCCAGACCGATGAATCCATGTCCGTCATCGCTGGATCCTACGGTTACATTGCACCAGAATATGCATATACACTTCAAGTGGATGAAAAGAGTGATATTTATAGCTATGGAGTTGTTTTGATGGAGATCTTAAGTGGGAAGAGATCTGTGGACTCAGAATTTGGGGATGGAAACAGCATTGTGGATTGGGTGAGATCCAAAATTAAAATTAAGGATGGAGTCAATCAAATATTGGATAAGAATGCTGGTGCGTCTTGTGTGTCTGTTAGAGAAGAAATGATACAGATGCTTCGTATTTCGTTGCTTTGTACTAGTCGTAACCCTGCAGACCGACCATCAATGCGCGACGTTGTTTTGATGCTACAAGAGGCTAAACCAAAGAGAAAATTATTTGGAACCGTCATTGATGAAAGAAATGGTAATTGTGATAGTAGTGAGAATATAATTTGCAACCGTCATGAAAGAGATGGTGATGTCCTTTTAAGCCACAAGACAGTAGATGAGTGTTAA 3138 45.83 MNPDSSFLLFVVVVVLLLITINPFLLEVLSATPTALPLQLLSLLSLKSSIKDPFSSFHDWDPTPTFTRADYQDPIWCSWSGIECHQNSAEITSLDLSQRNLSGYIPSEIKYLTSLIHLNLSGNSFLGPFPTAIFELPQLRTLDISHNNFSSIFPPGISKLKFLNVFNAYSNNFTGPLPQDLAHLHFLERLNLGGSYFSGSIPGSYGGFSRLKYLHLAGNALDGQIPEQLAYLNQLERMEIGYNTFSGGIPSEFPLLLNLKYLDIAGANISGTLPQDIGNMTKLQNLLLFKNRISGEIPASLGKLVAVKELDLSENELTGTIPSDLYDLKEMTELSLMGNDLSGEIPQALGDLPNLATLQLWNNSFTGPLPQKLGSNDKLLHVDVSSNMLTGPIPPDLCHGNKLFKLILFSNNLGHELPASLANCTSLTRFRIQNNRLNGSIPYGFGLLENLTFADFSNNNFSGEIPADFGNAVRLQYLNISQNAFGTSLPENIWNSTRLEILSASSSKIIGNIPDFIGCRSIYKIELQDNNLNSSIPWTIGHCEKLLTLNLSRNSLTGIIPWEISTLSWITAIDLSRNFLTGTIPSNFQNCSTIESFNVSYNMLTGPIPSTGTIFPALHPSSFTGNDGLCGEILSKPCAADTLTTGAIEVRQQQPRRRAGAIVWIMAAAFGIGLFVLVAGTRCFQANYNRRFGGGDEEIGPWKLTAFQRLNFTAEEVLECLAMTDKILGMGSTGTVYKAEMPGGEIIAVKKLWGKYKENIRRRRGVLAEVDVLGNVRHRNIVRLLGCCSNRECTMLLYEYMPNGNLDDLLHGKNKGENLGADWMTRYKIALGVAQGICYLHHDCDPVIVHRDLKPSNILLDGEMEARVADFGVAKLIQTDESMSVIAGSYGYIAPEYAYTLQVDEKSDIYSYGVVLMEILSGKRSVDSEFGDGNSIVDWVRSKIKIKDGVNQILDKNAGASCVSVREEMIQMLRISLLCTSRNPADRPSMRDVVLMLQEAKPKRKLFGTVIDERNGNCDSSENIICNRHERDGDVLLSHKTVDEC 1045
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1134112 1140198 - Lsi07G001000.1 Lsi07g00100 666522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00100 1045 Pfam Leucine rich repeat N-terminal domain 39 84 IPR013210 -
Lsi07g00100 1045 Gene3D Ribonuclease Inhibitor 400 519 IPR032675 -
Lsi07g00100 1045 Gene3D Phosphorylase Kinase; domain 1 707 800 - -
Lsi07g00100 1045 SMART LRR_typ_2 208 232 IPR003591 -
Lsi07g00100 1045 SMART LRR_typ_2 136 160 IPR003591 -
Lsi07g00100 1045 SMART LRR_typ_2 304 328 IPR003591 -
Lsi07g00100 1045 SMART LRR_typ_2 473 496 IPR003591 -
Lsi07g00100 1045 SMART LRR_typ_2 352 376 IPR003591 -
Lsi07g00100 1045 SMART serkin_6 722 1001 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi07g00100 1045 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 11 1015 - -
Lsi07g00100 1045 Gene3D Ribonuclease Inhibitor 39 192 IPR032675 -
Lsi07g00100 1045 Pfam Leucine rich repeat 91 149 IPR001611 GO:0005515
Lsi07g00100 1045 Gene3D Ribonuclease Inhibitor 193 296 IPR032675 -
Lsi07g00100 1045 ProSiteProfiles Protein kinase domain profile. 722 1007 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi07g00100 1045 ProSitePatterns Protein kinases ATP-binding region signature. 728 751 IPR017441 GO:0005524
Lsi07g00100 1045 ProSitePatterns Serine/Threonine protein kinases active-site signature. 848 860 IPR008271 GO:0004672|GO:0006468
Lsi07g00100 1045 Pfam Protein kinase domain 725 994 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi07g00100 1045 Pfam Leucine Rich Repeat 572 591 IPR001611 GO:0005515
Lsi07g00100 1045 Pfam Leucine Rich Repeat 545 566 IPR001611 GO:0005515
Lsi07g00100 1045 SUPERFAMILY Protein kinase-like (PK-like) 725 997 IPR011009 -
Lsi07g00100 1045 SUPERFAMILY L domain-like 71 411 - -
Lsi07g00100 1045 Gene3D Ribonuclease Inhibitor 297 399 IPR032675 -
Lsi07g00100 1045 Gene3D Ribonuclease Inhibitor 520 640 IPR032675 -
Lsi07g00100 1045 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE TDR ISOFORM X3 11 1015 - -
Lsi07g00100 1045 SUPERFAMILY RNI-like 297 611 - -
Lsi07g00100 1045 Gene3D Transferase(Phosphotransferase) domain 1 801 1015 - -
Lsi07g00100 1045 ProSiteProfiles Leucine-rich repeat profile. 138 161 IPR001611 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00855 Lsi-Chr5:14265405 Lsi07g00100 Lsi-Chr7:1134112 3.23E-158 dispersed
Lsi05g01053 Lsi-Chr5:18048728 Lsi07g00100 Lsi-Chr7:1134112 0 dispersed
Lsi07g00100 Lsi-Chr7:1134112 Lsi11g00378 Lsi-Chr11:3882467 0 dispersed
Lsi07g00100 Lsi-Chr7:1134112 Lsi01g00847 Lsi-Chr1:6791970 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83759 PF00069 Pkinase 1.20E-46 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00100 - - csv:101215776 1886.69