Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00112 ATGACCCAGTTGCTGAATCTAGCTGTTGGAGTGGTTTTAGTTGCAGTTTTGGTGATTTTCCTTCTCATCTTCTTGAACAGAAGAGGAAAGGGGAAGGATGGTGATGAATACAATGACATAGAGAGAAAACAGGAGAGGGATAAAGGGGAGGAAGAGAGTGAAGAATTGGTGTGTTTTCAAGGTGGACAGGATCTTACCATTGTGGATATTTTGGAAGCTCCTGGGGAAGTGATTGGGAAAGCTAACCATGGAACTTTGTATAAGGCTTATTTGCAAGGAAGCAACACAGTAAGACTGCTGAGGTTTCTGAGGCCAGTTTGCACTGCTGGCCTTGAAGATTTTGTCAGTGAAATTGAGTTTTTGGGTTCCATAAGGCATCCAAATTTGGTGCCTCTTTTGGGATTCTATTCAGGTCCAAGAGCAGAAAAGCTTCTCATTCATCCATTTTACAGGCGAGGAAATCTAGCTCAGTTTATTAAAGATGGGAATGGCGACTCACACCGATGGGGAGTTATAAACAAGATATCAGTTGGTATTGCTAAAGGGTTGGATCATCTTCACACTGGCCTGCAAAAGCCAACAATCCATGGGAATCTTCAATCGAAAAATGTTCTTTTGGATAGGAATTATGAACCGTATGTCTCCGATTTCGGCCTACATCTACTATTGAATTCCTCATCTGCACAAGAGGTAGTTGAAGCTTCAGCAGCCAATGGCTACAAAGCTCCTGAGTTGATCAAGATGAAGGATGCAACTGAGGAGACTGACATCTACAGCTATGGTGTGATATTACTCGAGTTACTTTCGGGGAAGGAACCGATCAATGGAAAGCCTGATGAGGATTTTTACTTGCCTAACTTTATGAGAAATGCTGTTCTTGGACATAGAATTGCAGATTTGTTCCATCCAGAAATACTTCTATATAGCAGCATTGATGGAAATCATGTTACTGAAGAAAAGATTCTCAAATTCTTTCAGCTTGCTATGGCTTGTTGTTCTCCTTCTCCTGCTCTTAGACCTAGTATGAAGCAAGTGCTACGTAAGCTCGACGAAATCGGAACGTAG 1065 41.88 MTQLLNLAVGVVLVAVLVIFLLIFLNRRGKGKDGDEYNDIERKQERDKGEEESEELVCFQGGQDLTIVDILEAPGEVIGKANHGTLYKAYLQGSNTVRLLRFLRPVCTAGLEDFVSEIEFLGSIRHPNLVPLLGFYSGPRAEKLLIHPFYRRGNLAQFIKDGNGDSHRWGVINKISVGIAKGLDHLHTGLQKPTIHGNLQSKNVLLDRNYEPYVSDFGLHLLLNSSSAQEVVEASAANGYKAPELIKMKDATEETDIYSYGVILLELLSGKEPINGKPDEDFYLPNFMRNAVLGHRIADLFHPEILLYSSIDGNHVTEEKILKFFQLAMACCSPSPALRPSMKQVLRKLDEIGT 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1233110 1235156 - Lsi07G001120.1 Lsi07g00112 666534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00112 354 ProSiteProfiles Protein kinase domain profile. 72 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi07g00112 354 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 5 353 - -
Lsi07g00112 354 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 5 353 - -
Lsi07g00112 354 SUPERFAMILY Protein kinase-like (PK-like) 75 349 IPR011009 -
Lsi07g00112 354 Gene3D Phosphorylase Kinase; domain 1 43 149 - -
Lsi07g00112 354 Gene3D Transferase(Phosphotransferase) domain 1 151 354 - -
Lsi07g00112 354 Pfam Protein tyrosine and serine/threonine kinase 76 283 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00112 Lsi-Chr7:1233110 Lsi02g02066 Lsi-Chr2:26822626 6.14E-67 dispersed
Lsi07g00112 Lsi-Chr7:1233110 Lsi09g00482 Lsi-Chr9:5067947 2.12E-104 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83760 PF07714 PK_Tyr_Ser-Thr 5.10E-32 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00112 - - csv:101206706 642.499