Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00120 ATGATGCCCAAATTTAAAACCATCATTACAACGACAACCCATGCAAAATTAGACAAATATGGGTCTTTCGCCGGATCTTCACGGCGGCGAGTGCTCGACCCGCGCCGTGCGTGGGTCCAGCGGTGGAATCGCGTGGTTCTGCTGGCACGTGCAGCCTCGGTGGCGGTTGACCCGCTCTTCTTTTACGTCATTTTTCTCACCAAGGTTGGCCCGCCCTGCTTCTACCGGGATACGGCTGTTGCTGCCGTCGTCACCGTCGTGCGGACGTGCGTGGACATGGTGCACGTCTGCCACGTGTGGATGCAGTTCCGTCTAGCGTTCATTTCGACGGCGTCGTTGGTGGTTGGAAGTGGAAGCCTCGTGTGGGACGCACGTGCCATTACTTCTCACTATTTGAGGTCCTTTAGAGGTTTCTGGCTCGATTTGTTTGTCATTATTCCCATCCCTCAGGTTGTGACATGGTTGATTTTACCAAAACTATTGAGAGAAGAAGAGATAAAAAAGATGATGAGAGTGTTATTATTGAGCTACCTATTTCAGTTCCTTCCAAAGCTTTACCACAGCATTTACTTGATGAAGAAGCTCCAAAAAGTCACTGGCTTTATCTTTGGCAGCATTTGGTGGCGCTTTAATCTCAATGTCTTTGCCTATTTGATTGCCTCTCATGTTGTAGGTGGATGCTGGTATGTTCTTGCGACGCAACGACTAATCTCGTGCCTCGAACAAAAATGCGAGAGACGAAAAACAACCTGCAAATTAGCATTGTCTTGCTCCATATCTGGCTACAAGGGGGCTGGTAAATTTGGAGCTTCCCATGGTAATAACTTGACAAAGATCAAGTCCTTATGCTTGGAGGTCAATGGACCCTTTAGCTATGGAATTTATGAGCCTGTTCTTTTGGTATTCTCTAGCAACTCTCTAGCTGTTAGAATCCTTTATCCTGTCTTCTGGGGTTTATTGAACCTAAGTTCCTTTGGCAATGAACTTGATCCCACATGTGATTTGGTGGAAGTGATATTCAGTAGCTGCATCACACTTGGGGGATTGGTGCTGTTTGTTACCTTAATTGGAAATATTCAGATTTTCTTGCAAACTGTTATGGCAAGTAAGGAGAATATGCAAATACGTTTTCGAGATATGAAGTGGTGGATGAAGAGGCGACAATTGCCCGTTCATTTGAGGGAAAGGGTTCGTAATTTTGAATATCAGAGGTGGGTAACCATGGGAGGGTTAGATGAGACTGAACTCATCGGTGGTTTGCCTGATGGCCTTCGTCGAGACATCAAACGTTACCTTTGTTTAGACCTTGTTAAGAAGGTACCTTTCTTTCACATGTTTGATGATCTCATACTCGATAACGTTTGTGATCGTGTTAAACCGCTCCTATATGCTGAAGGTGAAAAGATAGTAAGGGAGGGAGATCCTGTGCAAAGAATGGTGTTCATTGTTGAAGGATGCGTGGAGCGTAGCCAAGGATGCCTAAGCAAAGGCTTTGTAGGCACTAGTTGGCTCAACTCCGGTGGCTTTTTCGGAGAGGAGCTACTACCATGGTGTCTCCGACTCCGACAGCATCGATATTTTGACAAGCTTCCAACCTCATTGGCAACATTTAAATGTTTACAGCCAGTCGAAGCATACGGCCTCAACGCACCCGATCTCAAGTACATTACCAAACACTTTCGTTACAAGTTTGCAAGTGAAAAGCTAAAGCAAACAATGCGTTATTACTCTTCAAATTGGCGAACATGGGGAGCAGTGATCATTCAGTTTTCATGGCGTCGTCATCGGATACAAACTCGAGGTTACACGACACAAAACCGAACAACTAACAATCGACTAAGGCAGTATGCTGCAGTTTTCTTATCGTTGAAGCCAAACGATCATCTCGAGTAG 1893 45.54 MMPKFKTIITTTTHAKLDKYGSFAGSSRRRVLDPRRAWVQRWNRVVLLARAASVAVDPLFFYVIFLTKVGPPCFYRDTAVAAVVTVVRTCVDMVHVCHVWMQFRLAFISTASLVVGSGSLVWDARAITSHYLRSFRGFWLDLFVIIPIPQVVTWLILPKLLREEEIKKMMRVLLLSYLFQFLPKLYHSIYLMKKLQKVTGFIFGSIWWRFNLNVFAYLIASHVVGGCWYVLATQRLISCLEQKCERRKTTCKLALSCSISGYKGAGKFGASHGNNLTKIKSLCLEVNGPFSYGIYEPVLLVFSSNSLAVRILYPVFWGLLNLSSFGNELDPTCDLVEVIFSSCITLGGLVLFVTLIGNIQIFLQTVMASKENMQIRFRDMKWWMKRRQLPVHLRERVRNFEYQRWVTMGGLDETELIGGLPDGLRRDIKRYLCLDLVKKVPFFHMFDDLILDNVCDRVKPLLYAEGEKIVREGDPVQRMVFIVEGCVERSQGCLSKGFVGTSWLNSGGFFGEELLPWCLRLRQHRYFDKLPTSLATFKCLQPVEAYGLNAPDLKYITKHFRYKFASEKLKQTMRYYSSNWRTWGAVIIQFSWRRHRIQTRGYTTQNRTTNNRLRQYAAVFLSLKPNDHLE 630
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1352537 1356967 - Lsi07G001200.1 Lsi07g00120 666542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00120 630 CDD CAP_ED 442 556 IPR000595 -
Lsi07g00120 630 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 26 630 - -
Lsi07g00120 630 Pfam Ion transport protein 42 363 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Lsi07g00120 630 ProSiteProfiles cAMP/cGMP binding motif profile. 442 515 IPR000595 -
Lsi07g00120 630 Gene3D Helix hairpin bin 368 433 - -
Lsi07g00120 630 SUPERFAMILY cAMP-binding domain-like 369 560 IPR018490 -
Lsi07g00120 630 SUPERFAMILY Voltage-gated potassium channels 34 370 - -
Lsi07g00120 630 Gene3D Jelly Rolls 440 562 IPR014710 -
Lsi07g00120 630 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 2-LIKE 26 630 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00155 Lsi-Chr3:2154484 Lsi07g00120 Lsi-Chr7:1352537 5.76E-54 dispersed
Lsi03g00156 Lsi-Chr3:2155704 Lsi07g00120 Lsi-Chr7:1352537 6.19E-136 dispersed
Lsi05g00683 Lsi-Chr5:9081344 Lsi07g00120 Lsi-Chr7:1352537 1.25E-43 dispersed
Lsi07g00120 Lsi-Chr7:1352537 Lsi11g00684 Lsi-Chr11:7207436 6.57E-120 dispersed
Lsi07g00120 Lsi-Chr7:1352537 Lsi03g01408 Lsi-Chr3:25030619 9.04E-115 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00120 K05391 - zju:107414103 818.92