Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00122 ATGTTCCAAGGGTTTGTTTTCGGCATTAATGACGTGTACGGTCACGAATTCTCCGCCGTGTCTCTGCCGGAAATCACTTACAGCCACTTAACGGAACAAATCGACGACACGGCGGTATTCAGCTCCGACGAGTTTCGAATGTACGCTTACAAGATCCAACGGTGTCCAAGAAACCGCAGCCACGATTGGACGGAATGTCCGTACGCCCACCGTGGCGAGAAGGCGCAACGCCGTGACCCACGGCGGTTCAACTACACTGCTGTGGCCTGCCCGGCTTTTCGGTCGGGCAGCTGCCCGAAGGGAGATTTTTGTGAATTTGCTCATGGGGTTTTCGAGTACTGGCTCCACCCGGCCCGGTACCGGACCCGGGCCTGTAATGCGGGCCGGTTTTGCCAACGCAAAGTTTGTTTTTTCGCTCACTCGCCGGAGGAGCTCCGCCCAGAGACCAAGCAGAAGTTTAATTTTAATGCTCACCGGCAGCGTGCGGCGGTTACCGCCATTGAATGTCCGCCGGAGGAAAAAATTGACGGCGTTTTAGAAACTCCGGTGAGGGAGAACGGCGGCGGACGGGAAAATGGACGGAGTTTTGGGTTGGAGGTCTCGGAATTGGACTTGCCGCATATTGAATGGATATCGGAATTGTTGCAGTAA 651 54.99 MFQGFVFGINDVYGHEFSAVSLPEITYSHLTEQIDDTAVFSSDEFRMYAYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELRPETKQKFNFNAHRQRAAVTAIECPPEEKIDGVLETPVRENGGGRENGRSFGLEVSELDLPHIEWISELLQ 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1367872 1368522 - Lsi07G001220.1 Lsi07g00122 666544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00122 216 SUPERFAMILY CCCH zinc finger 83 114 IPR036855 GO:0046872
Lsi07g00122 216 Gene3D - 80 155 - -
Lsi07g00122 216 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 54 33 162 - -
Lsi07g00122 216 ProSiteProfiles Zinc finger C3H1-type profile. 84 111 IPR000571 GO:0046872
Lsi07g00122 216 PANTHER UNKEMPT FAMILY MEMBER 33 162 IPR045234 -
Lsi07g00122 216 SMART c3hfinal6 84 110 IPR000571 GO:0046872
Lsi07g00122 216 SMART c3hfinal6 119 142 IPR000571 GO:0046872
Lsi07g00122 216 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 89 109 IPR000571 GO:0046872
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00122 Lsi-Chr7:1367872 Lsi10g01438 Lsi-Chr10:18464037 2.67E-51 dispersed
Lsi07g00121 Lsi-Chr7:1360948 Lsi07g00122 Lsi-Chr7:1367872 5.66E-165 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25579 PF00642 zf-CCCH 1.20E-05 CL0537 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00122 - - mcha:111011570 313.538