Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00123 ATGCTTTTGAGAGAAGTCTGTTCCAGAAACGCAGATCAGATGTGCCGTGTAGAATCTCGTGTTCATCTATCTGAAGAAGAGGAAATTGCTGCAGAAGAGAGCCTCTCACTTTACTGCAAGCCAGTTGAACTCTATAACATTCTTCAGCGCCGTGCTATTAGAAACCCACTGTTTCTTCAAAGATGTTTAAGGTACAAAATAGAGACAAAACACAAGAGAAGGATCCAAATGACAATTTCAATCTCTAGGACTTCGAGTGCGGGTGGCCAGACACAGAATCTGTTTCCTATGTATGTCATCTTGGGAAGATTAGTCTCTGACATTGCAGTTGCTGAGTTCTCTGGTGTATATCGCTTCGATCGAGCTTGCCTCTTAACTGGCATTAACAGAGTGGAATGCAATTCTCAAGTTATAGCTAATTTCATCCTTCCTGAAATTAACAAGCTAGCTGTGGAGGCAAAATCTGGGTCACTTGCTATATTATTTGTTAGCTGTGTTGGATCTCCAAATACTTTGTCTGGAGTAGATTCAGTTGATGGGCCTTTATACATGGCATCTGTTCCTGGGTACTGCTTATGGGGCAAGATACCTCTGGAATCACTTTACATTTCGTGGCAGAATTCATCAAATTTTGGTCTTGGACAGAGGGCTGAGATAATGTCAACTGTTGACATGCGCTCTTGTGTTGTGAAGACAAGTTGCTTGGATGGAGAGAAGTTGAGGGCGGGAAATGTTATTTTCAATTATAGGTACTACAACAACAGATTGCAGAAAACTGAAGTAACCGAAGACTTTTCCTGTCCATTTTGCTTGGTTAAATGTGCAAGCTTTAAGGTAACCGAAGAGTATCAAGCTGTAAATGTTTCCACGAAGACTGATGTTTGGAGGTCTGAGATCATCGCAGATGGCATTGATCCAAAGCAGCAGACATTCTTCTTCTGGCAAGTCATCTCAAGACCTCTCAGACGCAGAAAAGTTAAGAGCACAGTTCAAAGTGTAAAGCACATACATCCTTTTGTTGTAGAGTCTGAATATTCAGACAAGGCGGATGATGCTCAATCTAGCAAAGGTGAAAAGGCTCAAATATCAGGTTTTTTAAGTACCACTCTGCATTCATCCTATGATCCTGACTGCGTACAATCAATATCAGGGCACAATGTTGCACCAACTATGCTGCAATTTGCCAAGACAAGAAAATTGTCGATTGAACGTGCAGACCCGAGACATCTTCTTAAGTATGTTATGAGTCGGGGATTCTTCCAGAGGTGGCCAATGGCATTGGAACAAGTATTATCAGATCGAGATAGTGAAGATGAAGTTGATGATGATGTTGCAGATCTCGAGGATAGGAGGACAAGATTGTATGGACGTGTTAAAATTAACTTGAGACCAGTTGTGGGTCAATATGGAAGGAGTTGTATGGGTGAGGGCAACAGTGCAAGAGTGACAATGTGGTATGTTGTAGTGCCAAGCGTTTTTGTTTTCAGTTTGATGCTTGATGATTTTGTCGATGTAACCAGAGATGAGAAGCGAATGATGCACATGTGGAATTCATTTGTCAGGAAGCAACGGGTGCTGGCAGATGGCCATATCCCCTGGGCTTGTGAGGCATTTTCACAATTACATGGGCCAAACCTTGTCAAAACTCCAGCTCTACTATGGTGCTGGAGATTGTTTATGATTAAGTTATGGAACCATGGCCTACTTGATGCAAACTCCATGAACAGTTGTAACATTATTCTTGAAAGAATACATAGTGAAGCTTCGGATCCTAAAAGCTGA 1782 41.81 MLLREVCSRNADQMCRVESRVHLSEEEEIAAEESLSLYCKPVELYNILQRRAIRNPLFLQRCLRYKIETKHKRRIQMTISISRTSSAGGQTQNLFPMYVILGRLVSDIAVAEFSGVYRFDRACLLTGINRVECNSQVIANFILPEINKLAVEAKSGSLAILFVSCVGSPNTLSGVDSVDGPLYMASVPGYCLWGKIPLESLYISWQNSSNFGLGQRAEIMSTVDMRSCVVKTSCLDGEKLRAGNVIFNYRYYNNRLQKTEVTEDFSCPFCLVKCASFKVTEEYQAVNVSTKTDVWRSEIIADGIDPKQQTFFFWQVISRPLRRRKVKSTVQSVKHIHPFVVESEYSDKADDAQSSKGEKAQISGFLSTTLHSSYDPDCVQSISGHNVAPTMLQFAKTRKLSIERADPRHLLKYVMSRGFFQRWPMALEQVLSDRDSEDEVDDDVADLEDRRTRLYGRVKINLRPVVGQYGRSCMGEGNSARVTMWYVVVPSVFVFSLMLDDFVDVTRDEKRMMHMWNSFVRKQRVLADGHIPWACEAFSQLHGPNLVKTPALLWCWRLFMIKLWNHGLLDANSMNSCNIILERIHSEASDPKS 593
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1376816 1396939 - Lsi07G001230.1 Lsi07g00123 666545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00123 593 Pfam VEFS-Box of polycomb protein 400 451 IPR019135 -
Lsi07g00123 593 Pfam VEFS-Box of polycomb protein 497 579 IPR019135 -
Lsi07g00123 593 PANTHER POLYCOMB GROUP PROTEIN EMBRYONIC FLOWER 2-RELATED 14 451 - -
Lsi07g00123 593 PANTHER POLYCOMB GROUP PROTEIN 14 451 - -
Lsi07g00123 593 PANTHER POLYCOMB GROUP PROTEIN 497 592 - -
Lsi07g00123 593 PANTHER POLYCOMB GROUP PROTEIN EMBRYONIC FLOWER 2-RELATED 497 592 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00123 Lsi-Chr7:1376816 Lsi07g01266 Lsi-Chr7:18480197 1.06E-10 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00123 - - cmo:103494459 897.501