Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00150 ATGGCAACTTGTTTTAGTTTCTCTTCCACCATGGATTCCTGTTTCCGCTACTCCTTTTCTAGGGCAGGCCTCAAATCCATCACCACCGATCTCGGCGATGGAACCATTGTCCATTGTTGGGCGCCCAAATTCAGAAGAGAGATAAAACCTAATTTGCTTCTCCTCCATGGATTTGGAGCCAACGCAATGTGGCAATGGAACGAATTCATATCGCCATTGATTCGATTCTTCAATGTCTACGTTCCTGATCTAATTTTCTTCGGCAATTCGTACACGACTCGGCCAGAGAGATCCGAGTCTTTTCAGGCTCGCTGTATGATGCGTTTAATGGATTCGCTTGATGTTCGGAAGGTGAATGTCGTTGGAATTAGCTACGGTGGCTTTGTATCATACAGCATGGCTATTCAATTTCCTGAGCGATTGGAGAAACTGGTGCTCTGTTGCGCTGGAGTTTGCTTGGAAGAAAAAGATATGGCGGACGGGATGTTCGTCGTGAAGAACGTCGATGAGGCCGCTAGCATTTTGCTGCCTCAAACGCCGGCAAAGCTCAAGGAACTCCTCCGCCTCACCTTCGTCAAGCCTGCTCGAATTTTACCTACTTGTATAATCGACGATTTCATCGATGTGATGTGCACAGAGTACAAGCAAGAAAAAGAAGAGTTGATTAAAGAAATACTCAAGGACAGGAACTTATCTAATCTTCCCAAGATCGATAAGCCAACGTTGATAGTATGGGGAGAACAGGATCGAGTTTTTCCTTTGGAGTTGGCACATAGATTAAAAAGGCACTTGGGGGAAAATGCAGAATTAGTAGTTGTAAAGGAAGCAGGGCATGCAATCAATGCAGAGAAGCCAAAAGAGATGTACAAACACATCAAGGCTTTTGTTACCACTCATCCCAACCTTTCCCCTTCAACAAACTCTTCTCTTTGTAGCTTTTGA 942 44.69 MATCFSFSSTMDSCFRYSFSRAGLKSITTDLGDGTIVHCWAPKFRREIKPNLLLLHGFGANAMWQWNEFISPLIRFFNVYVPDLIFFGNSYTTRPERSESFQARCMMRLMDSLDVRKVNVVGISYGGFVSYSMAIQFPERLEKLVLCCAGVCLEEKDMADGMFVVKNVDEAASILLPQTPAKLKELLRLTFVKPARILPTCIIDDFIDVMCTEYKQEKEELIKEILKDRNLSNLPKIDKPTLIVWGEQDRVFPLELAHRLKRHLGENAELVVVKEAGHAINAEKPKEMYKHIKAFVTTHPNLSPSTNSSLCSF 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1600852 1605837 - Lsi07G001500.1 Lsi07g00150 666572

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00150 313 Gene3D alpha/beta hydrolase 9 299 IPR029058 -
Lsi07g00150 313 PRINTS Alpha/beta hydrolase fold signature 134 147 IPR000073 -
Lsi07g00150 313 PRINTS Alpha/beta hydrolase fold signature 120 133 IPR000073 -
Lsi07g00150 313 PRINTS Alpha/beta hydrolase fold signature 241 255 IPR000073 -
Lsi07g00150 313 PRINTS Alpha/beta hydrolase fold signature 76 91 IPR000073 -
Lsi07g00150 313 Pfam TAP-like protein 236 298 IPR013595 -
Lsi07g00150 313 PRINTS Epoxide hydrolase signature 239 255 IPR000639 GO:0003824
Lsi07g00150 313 PRINTS Epoxide hydrolase signature 120 133 IPR000639 GO:0003824
Lsi07g00150 313 PRINTS Epoxide hydrolase signature 134 147 IPR000639 GO:0003824
Lsi07g00150 313 PRINTS Epoxide hydrolase signature 273 295 IPR000639 GO:0003824
Lsi07g00150 313 PRINTS Epoxide hydrolase signature 76 91 IPR000639 GO:0003824
Lsi07g00150 313 Pfam alpha/beta hydrolase fold 50 152 IPR000073 -
Lsi07g00150 313 PANTHER SI:DKEY-122A22.2 3 304 - -
Lsi07g00150 313 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 3 304 - -
Lsi07g00150 313 SUPERFAMILY alpha/beta-Hydrolases 25 296 IPR029058 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00150 - - - csv:101220773 598.201
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02234 Lsi-Chr4:29386583 Lsi07g00150 Lsi-Chr7:1600852 4.11E-110 dispersed
Lsi07g00150 Lsi-Chr7:1600852 Lsi08g00965 Lsi-Chr8:18144523 9.78E-56 dispersed
Lsi01g00777 Lsi-Chr1:6104485 Lsi07g00150 Lsi-Chr7:1600852 1.26E-149 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g977 Blo04g00917 . . . Bpe15g00428 . . . Cmo04g00877 Cmo16g00763 . . . . . . . . . . . . . . . . . . . . . Cone8ag0812 . . . . . Chy07g01245 . . . . . . . Bma03g00989 . Sed05g3619 . . Cma16g00706 . . . . Cpe14g00603 Bhi10g02010 Tan05g1308 Cmetu07g0234 . Hepe08g1015 . . . . . . . . . Lsi07g00150 Csa04g00453 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002597 1 2 1 1 1 2 3 2 2 2 2 2 3 2 2 2 2 0 3 2 2 2 2 1 2 2 2 4 2 0 56
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi07g00150 Lsi_Chr07 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.380575 0.0 0.0 0.0