Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00152 ATGGGAAAACTCTATCTTACAGCTCTAGTTCTGGCTTGCTTTCATTACTTTGCGCTGTCTGATTTTCAAGGTGAAGCACTCATTGCATTCAAGAACGCATTGAATGCAACAAGTAGTCAGCTCATAACTTGGAACCCAAATCATATCAATCCATGCAGTAGTTGGTCCAATATTATGTGTAATGGGAACAATGTGACAGCTATAACCTTGCCAACAATGGAATTTACTGGAACCTTGTCTCCAACAATTGTTGCGATAAAATCTCTTTCAACCCTGAACTTGAAGGGAAATTACATAACTGGAGGGATACCAGAGGAGTTTGGAAACCTGACAAATTTGGTCACTTTGGATCTAGAAAATAACAGCCTAATTGGTCAAATACCATCGTCCCTGGGTAATCTTAAGAAACTACGGTTCCTAACTCTGAGTCAAAATCATCTAACTGGGACTATTCCTGAGACATTTTCAACCCTTCCTAGCTTGATCAATCTCTTGCTTGATTCGAATAATCTCAGTGGCCAAATTCCGGAGCAGTTATTTCAAGTTTCAAAATTCAACTTTTCTGGAAATAAGTTGGATTGTGGCAAAAATTCACGTTGGTCCTGTGATTCGGACAGTACAAACTCAGGTGCTTCAAATAAATCGAAGGTCGGCCTCATAGCTGGACTTATTGCTGGGTTAATAGTTGCTCTTCTTTTGGTTGGATTAGTATTTTTATTGTGTAAGCATAGATATAAAGGCTACAAGGGTGAAGTCTTCGAAGATGTTCCCGGTGAAATTGATCGAAGAATTGCATTTGGTCAGCTGAAAAGATTTGCATGGAGGGAACTACAGCTAGCTACAGAAAATTTTAGTGAGGAAAATGTTATAGGACAAGGAGGCTTTGGAAAGGTTTACAAAGGGGTGCTTGCTGATGGCACCAGGGTTGCAGTGAAACAGTCAACTAATTATGAAAGCCTTGGGGGAGATGCTGCTTTTCTGCGTGAAGTTGAGATGATTAGTGTAGCTGTTCATAGAAATCTATTGCGGTTGATTGGGTTCTGTACAACTCAGACCGAACGCTTATTGGTATATCCCTATATGCAGAACTTGAGTGTAGCCTACCGTCTTCGAGATTCTGGTTTGGACAGGGAAATATTGGCCATAGGCTATTTTTTTCCTGTATGTGAATTTGTGCAATATGAACACTTGTATCTACTACTTTTCATTTTCGTATTACTTTTTCAACCTTGGAATATTTTGATTATGAAAATGACTTTTTGTGAGAGGGTGTGGTGGGTGGCGAATTATCACAATCTTGAATTGGAAGGTGCTCTCAAGATCTTGCCTGGGATAGAAACAACCCTGATAAGTCTTTTCAGTGTTGTCATTTTCTCCGTTAATTTCTTGCTCGATTGCTCTGTTCATCACCTTCCTGCTCTCCCCATTTCCTCAGTTAGGGTTCTTCTTAATGAAAACTTATGTAAAATAGTCTTGCAGAATACTGAGCATACAAAACTTAAGCCTGGGGAACCTATTTTAGATTGGCCTACTCGCAAACGTGTGGCATTGGGGACAGCTCGTGGTTTAGGATATCTTCATGAACATTGCAATCCAAAGATTATTCACCGAGATGTTAAGGCTGCTAATGTATTGCTTGATGAGGATTTTGAAGCAGTTGTTGGCGATTTTGGCCTGGCCAAGTTGGTTGATGTTAGGAAGACTAGCGTCACAACTCAAGTTCGGGGGACGGTTGGCCACATAGCACCGGAGTACTTATCCACTGGGAAATCATCAGAAAAGACTGATGTTTTTGGTTATGGCATTATGCTTTTAGAACTTATTACAGGGCAACGTGCGATCGACTTCTCACGCTTTGAAGGAGATGATGATGTTTTACTCCTAGACCATGTCAAGAAATTGGAAAGGGAGAAGCGACTCAACATTATTGTGGATGGAAACCTGAATAACTATGATATTAGAGAGGTGGAGACGATGGCCCAAGTTGCACTACTGTGCACGCAGCCATCTTCGGCCAGCCGGCCAACGATGTCACAAGTCATTCGGATGCTAGAAGGCGAGGGGCTCGGAGAGAGGTGGGAGGAATGGCAGCATTTAGAGGTGAGTCGCAGACAAGATTATGAGAGAATGCAAAGAAGATTTGAATTGGGGGATGATTCCATTTATAGACAGGAAGCTATCCAGTTGTCTGGTGGAAGATGA 2202 41.51 MGKLYLTALVLACFHYFALSDFQGEALIAFKNALNATSSQLITWNPNHINPCSSWSNIMCNGNNVTAITLPTMEFTGTLSPTIVAIKSLSTLNLKGNYITGGIPEEFGNLTNLVTLDLENNSLIGQIPSSLGNLKKLRFLTLSQNHLTGTIPETFSTLPSLINLLLDSNNLSGQIPEQLFQVSKFNFSGNKLDCGKNSRWSCDSDSTNSGASNKSKVGLIAGLIAGLIVALLLVGLVFLLCKHRYKGYKGEVFEDVPGEIDRRIAFGQLKRFAWRELQLATENFSEENVIGQGGFGKVYKGVLADGTRVAVKQSTNYESLGGDAAFLREVEMISVAVHRNLLRLIGFCTTQTERLLVYPYMQNLSVAYRLRDSGLDREILAIGYFFPVCEFVQYEHLYLLLFIFVLLFQPWNILIMKMTFCERVWWVANYHNLELEGALKILPGIETTLISLFSVVIFSVNFLLDCSVHHLPALPISSVRVLLNENLCKIVLQNTEHTKLKPGEPILDWPTRKRVALGTARGLGYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDVRKTSVTTQVRGTVGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAIDFSRFEGDDDVLLLDHVKKLEREKRLNIIVDGNLNNYDIREVETMAQVALLCTQPSSASRPTMSQVIRMLEGEGLGERWEEWQHLEVSRRQDYERMQRRFELGDDSIYRQEAIQLSGGR 733
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1630922 1642466 + Lsi07G001520.1 Lsi07g00152 666574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00152 733 Pfam Leucine rich repeat N-terminal domain 23 61 IPR013210 -
Lsi07g00152 733 Pfam Protein tyrosine and serine/threonine kinase 287 684 IPR001245 GO:0004672|GO:0006468
Lsi07g00152 733 SUPERFAMILY Protein kinase-like (PK-like) 271 686 IPR011009 -
Lsi07g00152 733 ProSitePatterns Serine/Threonine protein kinases active-site signature. 534 546 IPR008271 GO:0004672|GO:0006468
Lsi07g00152 733 SUPERFAMILY L domain-like 23 194 - -
Lsi07g00152 733 SMART serkin_6 284 684 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi07g00152 733 Pfam Leucine rich repeat 88 147 IPR001611 GO:0005515
Lsi07g00152 733 Gene3D Phosphorylase Kinase; domain 1 253 360 - -
Lsi07g00152 733 Gene3D Ribonuclease Inhibitor 21 204 IPR032675 -
Lsi07g00152 733 Gene3D Transferase(Phosphotransferase) domain 1 488 704 - -
Lsi07g00152 733 PANTHER LRR RECEPTOR KINASE SERK2 6 377 - -
Lsi07g00152 733 PANTHER LRR RECEPTOR KINASE SERK2 499 733 - -
Lsi07g00152 733 ProSiteProfiles Protein kinase domain profile. 284 689 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi07g00152 733 ProSitePatterns Protein kinases ATP-binding region signature. 290 312 IPR017441 GO:0005524
Lsi07g00152 733 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 6 377 - -
Lsi07g00152 733 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 499 733 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00152 Lsi-Chr7:1630922 Lsi08g00259 Lsi-Chr8:5908203 1.53E-40 dispersed
Lsi07g00151 Lsi-Chr7:1615746 Lsi07g00152 Lsi-Chr7:1630922 1.51E-143 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83762 PF07714 PK_Tyr_Ser-Thr 1.10E-38 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00152 - - csv:101220063 635.565