Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00158 ATGGAATTTACGGGCGGCCCCAACTGGGCAGTACGATTGGGGCGGCTGGACAGCTTAACAGCAAGCCAAGAAGACTCAAACCAGATCATGCCAAGTCCAAGAGCCAATGCAACTTCTCTCATTGACCTTTTCAACAAATACAACCTCTCTGTTAAAGATTTGGTTTCTCTTTCGGGTTCGCATTCGATCGGCCAAGGCCGGTGTTTCTCCATTATGTTTCGACTCTACAACCAGTCTGGCACGGGACAGCCGGACCCGGCCATCGAGCCGAGATTCAGAGAAGAGCTATTCAAGCGATGCCCTCAAGGTGGGGATGAAAATGTCACAGTCAACCTTGACTCCACACCTTATGTTTTTGACAATCAGTACTTCAAGGATTTGGTTGGTGGGAGAGGATTCTTGAATTCTGATGAAACTCTTTACACATTTTCTGGAACTAGAAGGTATGTGAGATTCTTTAGCCAAAATCAAAGGGCATTTTTCAGGGCATTTGTGGAGGGTATGTTGAAGATGGGTGACTTGCAGTCTGGCCGCCCAGGGGAACTGATTTTACAAAACCTCGAAAAACGAATTTAA 576 46.53 MEFTGGPNWAVRLGRLDSLTASQEDSNQIMPSPRANATSLIDLFNKYNLSVKDLVSLSGSHSIGQGRCFSIMFRLYNQSGTGQPDPAIEPRFREELFKRCPQGGDENVTVNLDSTPYVFDNQYFKDLVGGRGFLNSDETLYTFSGTRRYVRFFSQNQRAFFRAFVEGMLKMGDLQSGRPGELILQNLEKRI 191
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1675398 1680791 - Lsi07G001580.1 Lsi07g00158 666580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00158 191 Pfam Peroxidase 2 156 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi07g00158 191 Gene3D - 3 175 - -
Lsi07g00158 191 ProSiteProfiles Plant heme peroxidase family profile. 1 182 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi07g00158 191 Gene3D Peroxidase, domain 2 31 171 - -
Lsi07g00158 191 SUPERFAMILY Heme-dependent peroxidases 2 175 IPR010255 GO:0004601|GO:0006979|GO:0020037
Lsi07g00158 191 PANTHER PEROXIDASE 72-RELATED 3 182 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi07g00158 191 ProSitePatterns Peroxidases proximal heme-ligand signature. 53 63 IPR019793 -
Lsi07g00158 191 PANTHER PEROXIDASE 17 3 182 - -
Lsi07g00158 191 PRINTS Plant peroxidase signature 5 20 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi07g00158 191 PRINTS Plant peroxidase signature 126 143 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi07g00158 191 PRINTS Plant peroxidase signature 166 179 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi07g00158 191 PRINTS Plant peroxidase signature 110 125 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi07g00158 191 PRINTS Plant peroxidase signature 52 64 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi07g00158 191 PRINTS Haem peroxidase superfamily signature 53 68 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi07g00158 191 PRINTS Haem peroxidase superfamily signature 112 127 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi07g00158 191 PRINTS Haem peroxidase superfamily signature 5 17 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00158 Lsi-Chr7:1675398 Lsi03g00400 Lsi-Chr3:4580677 1.28E-39 dispersed
Lsi07g00158 Lsi-Chr7:1675398 Lsi01g00641 Lsi-Chr1:5166953 9.54E-44 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00158 K00430 - csv:116406090 323.939