Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00166 ATGATGGTGGAGTTCCATGGAGAAATCTCAGGCCCTGACGATGAAGAACACCAAGAACATGAAGAACAAGAAGAGGAAATTAGCTACGATGATCTCAAGAAACGAATGTGGAGAGATCGACAGAGGTTGAAGAAGATGAAGGAGAAGCGTAATGACGAAGAGCCTGAATCCGCCGCTAGAGAAGAAGCCTCTCGTCGTAAGAAAATGGCTAGAGCTCAAGATTCAATCCTCAAGTATATGGATAAGATTATGGAGGCTTGTAAGGCACAAGGCTTTGTTTATGGAATCGTCCCTGAAAAGGGTAAACCCGTCACCGGCTCCTCCGAGAGCCTCCGTGAGTGGTGGCGCGATGACGTCCGATTCGAACAAGATGCTCCCATGGCCATAGCTAAATTCCTCCCCAAAGTAATTGAAGAAACAGGGATCGATCCCAATTCGTTTTTGCACCTACTCACCGATTTACAGGACACAACATTGGGCTCTATTCTCTCTGCTCTGATGCAGCACTGTATGCCGCCGCAGAGGAAATTCCCACTGGAGAAGGGTTTAGCGCCACCGTGGTGGCCGACGGGGAACGAGCTTTGGTGGGGAGAACAGGGTTCCGCCGGTGGGCATGGCGTTCCGCCGTATAAAAAACCTCACGATCTCAAAAAGGCCTGGAAAATCAGTGTCCTGTCGGCGGTGATCAAACACATGTCCCCTGATTTGGACAGCATGAGGAAATTAGTTCGGCAATCGAAGAATTTACAAGCGAAAATGACGGCAAAAGAGACGCTTACTTGGGCTAAGGTAGTGAATCAAGAAGAAGCCCTGTTGCAATTAACAAAAAAGAGCCTGAGAATCACATCCGACGAAGAAGAAGACGGAGAGGAACAGGGCCCCGGTGAAATTATCGCGAAACGGAAGTGTATATTCGAACAAGAAGCTGTAGCTGATTCGACGCTGTACCCTTGCCAGAATCAATGGTGCCCACAGAGCGAGGCGCTGATGGGATTCGCGGACAAGAACGCAAGAACAGAGCATGAGACACTGTGCATTTACAGAGGAGGCGAGAGGGCGGAGCAGGAACAATTCTCAGACGAGCAATCGATCGACACGCATTTGAAGAGCGTGGTGGAGTGGATGAACTGGGAACTGTCGAGGGCAGAGCCGGGAAGCGAAGAAGCAAGGATCGAAGATGCCGGAGACGGGTCGGGGAGCAGCACGGTGGAGGATTACTGGAATGGCGGTGCGGTGGAGGAGGCGTTTGAGATGCAGAGAAGGAGTATGGATTTGAATGCGAGTCCGGCGGAGGATTTGAGTGCAGCCCAACAAGATGCCACTTCCATTTGGGATTTGAGATATGAATGGGCTGAAGAATGA 1362 50.51 MMVEFHGEISGPDDEEHQEHEEQEEEISYDDLKKRMWRDRQRLKKMKEKRNDEEPESAAREEASRRKKMARAQDSILKYMDKIMEACKAQGFVYGIVPEKGKPVTGSSESLREWWRDDVRFEQDAPMAIAKFLPKVIEETGIDPNSFLHLLTDLQDTTLGSILSALMQHCMPPQRKFPLEKGLAPPWWPTGNELWWGEQGSAGGHGVPPYKKPHDLKKAWKISVLSAVIKHMSPDLDSMRKLVRQSKNLQAKMTAKETLTWAKVVNQEEALLQLTKKSLRITSDEEEDGEEQGPGEIIAKRKCIFEQEAVADSTLYPCQNQWCPQSEALMGFADKNARTEHETLCIYRGGERAEQEQFSDEQSIDTHLKSVVEWMNWELSRAEPGSEEARIEDAGDGSGSSTVEDYWNGGAVEEAFEMQRRSMDLNASPAEDLSAAQQDATSIWDLRYEWAEE 453
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1778075 1779436 - Lsi07G001660.1 Lsi07g00166 666588

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00166 453 MobiDBLite consensus disorder prediction 1 67 - -
Lsi07g00166 453 MobiDBLite consensus disorder prediction 382 403 - -
Lsi07g00166 453 Coils Coil 29 49 - -
Lsi07g00166 453 Gene3D - 58 138 IPR023278 GO:0003700|GO:0005634
Lsi07g00166 453 Gene3D - 141 278 IPR023278 GO:0003700|GO:0005634
Lsi07g00166 453 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 16 449 IPR006957 GO:0005634
Lsi07g00166 453 PANTHER ETHYLENE INSENSITIVE 3-LIKE 5 PROTEIN 16 449 - -
Lsi07g00166 453 Pfam Ethylene insensitive 3 30 269 IPR006957 GO:0005634
Lsi07g00166 453 MobiDBLite consensus disorder prediction 45 67 - -
Lsi07g00166 453 SUPERFAMILY DNA-binding domain of EIN3-like 148 272 IPR023278 GO:0003700|GO:0005634
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00166 K14514 EIN3; ethylene-insensitive protein 3 - csv:101210698 712.99
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00166 Lsi-Chr7:1778075 Lsi08g00615 Lsi-Chr8:14472422 4.52E-110 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi06g00444 . 2 628 EIL Transcription Factor Family AT2G27050 59.0 2.1e-192 669.1
Lsi08g00615 . 8 572 EIL Transcription Factor Family AT2G27050 58.7 1.7e-170 596.3
Lsi06g00508 . 44 350 EIL Transcription Factor Family AT2G27050 58.3 1.8e-95 347.1
Lsi06g00508 . 44 578 EIL Transcription Factor Family AT1G73730 54.2 3.2e-142 502.3
Lsi06g00444 . 36 334 EIL Transcription Factor Family AT1G73730 62.5 7.0e-105 378.3
Lsi08g00615 . 40 335 EIL Transcription Factor Family AT1G73730 61.3 1.0e-103 374.4
Lsi07g00166 . 27 273 EIL Transcription Factor Family AT1G73730 54.3 1.6e-72 270.8
Lsi06g00444 . 3 628 EIL Transcription Factor Family AT3G20770 60.1 5.3e-210 727.6
Lsi08g00615 . 7 505 EIL Transcription Factor Family AT3G20770 64.0 3.4e-172 602.1
Lsi06g00508 . 44 292 EIL Transcription Factor Family AT3G20770 68.9 2.1e-97 353.6
Lsi06g00508 . 83 288 EIL Transcription Factor Family AT5G65100 59.3 8.1e-69 258.5
Lsi07g00166 . 27 355 EIL Transcription Factor Family AT5G10120 55.6 1.1e-98 357.5
Lsi06g00508 . 44 290 EIL Transcription Factor Family AT5G10120 53.6 3.0e-72 269.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012054 0 1 0 0 0 1 2 2 1 1 1 1 2 1 1 2 1 0 2 1 1 2 0 0 1 1 1 2 1 0 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25583 PF04873 EIN3 1.10E-110 No_clan Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi07g00166 Lsi_Chr07 FPKM 7.409162 7.107425 10.286126 10.138286 9.412868 5.714148 10.04306 7.532907 7.461302 10.51636