Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00166 ATGATGGTGGAGTTCCATGGAGAAATCTCAGGCCCTGACGATGAAGAACACCAAGAACATGAAGAACAAGAAGAGGAAATTAGCTACGATGATCTCAAGAAACGAATGTGGAGAGATCGACAGAGGTTGAAGAAGATGAAGGAGAAGCGTAATGACGAAGAGCCTGAATCCGCCGCTAGAGAAGAAGCCTCTCGTCGTAAGAAAATGGCTAGAGCTCAAGATTCAATCCTCAAGTATATGGATAAGATTATGGAGGCTTGTAAGGCACAAGGCTTTGTTTATGGAATCGTCCCTGAAAAGGGTAAACCCGTCACCGGCTCCTCCGAGAGCCTCCGTGAGTGGTGGCGCGATGACGTCCGATTCGAACAAGATGCTCCCATGGCCATAGCTAAATTCCTCCCCAAAGTAATTGAAGAAACAGGGATCGATCCCAATTCGTTTTTGCACCTACTCACCGATTTACAGGACACAACATTGGGCTCTATTCTCTCTGCTCTGATGCAGCACTGTATGCCGCCGCAGAGGAAATTCCCACTGGAGAAGGGTTTAGCGCCACCGTGGTGGCCGACGGGGAACGAGCTTTGGTGGGGAGAACAGGGTTCCGCCGGTGGGCATGGCGTTCCGCCGTATAAAAAACCTCACGATCTCAAAAAGGCCTGGAAAATCAGTGTCCTGTCGGCGGTGATCAAACACATGTCCCCTGATTTGGACAGCATGAGGAAATTAGTTCGGCAATCGAAGAATTTACAAGCGAAAATGACGGCAAAAGAGACGCTTACTTGGGCTAAGGTAGTGAATCAAGAAGAAGCCCTGTTGCAATTAACAAAAAAGAGCCTGAGAATCACATCCGACGAAGAAGAAGACGGAGAGGAACAGGGCCCCGGTGAAATTATCGCGAAACGGAAGTGTATATTCGAACAAGAAGCTGTAGCTGATTCGACGCTGTACCCTTGCCAGAATCAATGGTGCCCACAGAGCGAGGCGCTGATGGGATTCGCGGACAAGAACGCAAGAACAGAGCATGAGACACTGTGCATTTACAGAGGAGGCGAGAGGGCGGAGCAGGAACAATTCTCAGACGAGCAATCGATCGACACGCATTTGAAGAGCGTGGTGGAGTGGATGAACTGGGAACTGTCGAGGGCAGAGCCGGGAAGCGAAGAAGCAAGGATCGAAGATGCCGGAGACGGGTCGGGGAGCAGCACGGTGGAGGATTACTGGAATGGCGGTGCGGTGGAGGAGGCGTTTGAGATGCAGAGAAGGAGTATGGATTTGAATGCGAGTCCGGCGGAGGATTTGAGTGCAGCCCAACAAGATGCCACTTCCATTTGGGATTTGAGATATGAATGGGCTGAAGAATGA 1362 50.51 MMVEFHGEISGPDDEEHQEHEEQEEEISYDDLKKRMWRDRQRLKKMKEKRNDEEPESAAREEASRRKKMARAQDSILKYMDKIMEACKAQGFVYGIVPEKGKPVTGSSESLREWWRDDVRFEQDAPMAIAKFLPKVIEETGIDPNSFLHLLTDLQDTTLGSILSALMQHCMPPQRKFPLEKGLAPPWWPTGNELWWGEQGSAGGHGVPPYKKPHDLKKAWKISVLSAVIKHMSPDLDSMRKLVRQSKNLQAKMTAKETLTWAKVVNQEEALLQLTKKSLRITSDEEEDGEEQGPGEIIAKRKCIFEQEAVADSTLYPCQNQWCPQSEALMGFADKNARTEHETLCIYRGGERAEQEQFSDEQSIDTHLKSVVEWMNWELSRAEPGSEEARIEDAGDGSGSSTVEDYWNGGAVEEAFEMQRRSMDLNASPAEDLSAAQQDATSIWDLRYEWAEE 453
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1778075 1779436 - Lsi07G001660.1 Lsi07g00166 666588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00166 453 MobiDBLite consensus disorder prediction 1 67 - -
Lsi07g00166 453 MobiDBLite consensus disorder prediction 382 403 - -
Lsi07g00166 453 Coils Coil 29 49 - -
Lsi07g00166 453 Gene3D - 58 138 IPR023278 GO:0003700|GO:0005634
Lsi07g00166 453 Gene3D - 141 278 IPR023278 GO:0003700|GO:0005634
Lsi07g00166 453 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 16 449 IPR006957 GO:0005634
Lsi07g00166 453 PANTHER ETHYLENE INSENSITIVE 3-LIKE 5 PROTEIN 16 449 - -
Lsi07g00166 453 Pfam Ethylene insensitive 3 30 269 IPR006957 GO:0005634
Lsi07g00166 453 MobiDBLite consensus disorder prediction 45 67 - -
Lsi07g00166 453 SUPERFAMILY DNA-binding domain of EIN3-like 148 272 IPR023278 GO:0003700|GO:0005634
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00166 Lsi-Chr7:1778075 Lsi08g00615 Lsi-Chr8:14472422 4.52E-110 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25583 PF04873 EIN3 1.10E-110 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00166 K14514 - csv:101210698 712.99