Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00180 ATGTCGGTCGCTAACGCCGACACTTCTCCGACTATGTCGGATGCCTCGACGGTCGAGAAAAGCAGCAGCCCGGCAGAGAGGGCTGAGTGGGTCGCAAACCCACCAGAGCCGCCGGGGATATGGCGGGAGCTCATCGAGTCTCTCCGCGACACCATGGTTCCGGATCCGACGAAGCTTTCGTCCCTGAAGAACAAAACCGGAACTGCGGTGGTTGGAAGCCTATTGCAGGGTATGTTCCCTATCCTCTGCTGGGGACAGAGCTACAATCTGGGGAAGTTCAAGAATGACATCTTGGCTGGTTTGACTCTGGCTAGCCTGTGCATTCCCCAGAGTATTGGATATGCAAATCTGGCGAAACTTGATCCTCAATATGGGCTGTATACAAGCATTGTGCCACCGCTGGTTTATGCAGTGTTGGGAAGTTCGAGGGAAATAGCAATCGGACCGGTGGCCATAGTATCTCTGCTTTTGCCGTCCATGATTCAGAAAATTCAAGATCCCGCCGCCGATCCTCTTGCCTACAAAAACCTTGTCTTCACCGTCACTTTCTTCGCCGGAATATTTCAAGCCGCCTTTGGACTCTTTCGGCTGGGGTTTTTGGTGGATTTTCTGTCACATGCTGCGATAGTTGGGTTCATGGGTGGAGCTGCCATTGTAATTGGGCTTCAACAGCTCAAAGGATTGCTTGGCATCACTCATTTCACTAACAAAACTGATATTCTCTCTGTTATGGAAGCTGTGTTTGGATCATTCCATCATCATAATCATCAATGGAACCCCTTTAACTTCATCATTGGCTCTTCTTTCCTCTCCTTCATTCTCATCACCAAATTATTGGTAAGTTTGCAGGGGAAGAAGTACAAGAAAGTATTCTGGTTAGCAGCCATAGCTCCATTGTTGTGTGTAATCCTATCAACGCTTTTGGTGTTCCTCACAAGAGCTGATCAGCATGGCGTCAAGATCGTCAAACGAGTCCCTGCCGGCCTCAACCCCATCTCCGCTCGCCACATCCAAATTCACTCCCCTCACTTCTCCCAAATCCTCAATGCCGCCATCATCGTCGCCGTCGTAGCCCTTACAGAGGCAATTGCTGTGGGGAGGTCTTTAGCATCCATGAAAGGATACAACATTGATGGGAACAGAGAAATGGTTGCGTTAGGCTTTATGAACCTGGCCGGATCTCTTACTTCTTGCTACGCAGCAACAGGTTCTCTGTCACGGTCCGCGGTTAATTTCAGTGCAGGGTGCGAGACTGCGGTTTCGAACGTGGTTATGGCGGTGACGGTGATGATATCCTTGGAGATGTTCACCAAGCTCCTATACTTCACTCCCAACGCCATTCTAGCTTCCATTATTCTGTCGGCACTTCCAGGCCTCATTGATCTTCACCAAGCTTACAATATATGGAAGATCGACAAGCTCGACTTCTTGGCTTGCATTGCAGCTTTTTTCGGAGTTCTCTTTCTTTCTGTCGAATTCGGACTTCTCCTTTCGTTAGTGATATCATTTGCAAAAATAATAGTAATCTCAATCAAACCTGGGACTGAGATATTGGGAAAACTTCCTGGAACTGATACCTTTTGTGATATTCATCAATATCCAATGGCTCTTAACACTCCTGGAGTTCTTATCATCCGTGTTAAATCTGGTCTACTTTGCTTTGCAAATGCCAACTTCGTCAAACATAGGATTATGAGGTTCATCAGCAGCCAAGAAGATTCATCAGCAAAGAGAATCACTCACTTCCTAGTCATTGATCTCTCCAATTTAATGAACATTGACACTTCAGGAATTGCTTCTCTTGAAGAGCTGCAGACTAGTTTGGCAGCCAGTGGAATAGAGCTGAAAGGGAGGGTGTTCTTGAGTGTTGGGGAAGCTGTGGATGCATGCCTTTCAGCTAAAATGGGAGCAATCTAA 1917 47.37 MSVANADTSPTMSDASTVEKSSSPAERAEWVANPPEPPGIWRELIESLRDTMVPDPTKLSSLKNKTGTAVVGSLLQGMFPILCWGQSYNLGKFKNDILAGLTLASLCIPQSIGYANLAKLDPQYGLYTSIVPPLVYAVLGSSREIAIGPVAIVSLLLPSMIQKIQDPAADPLAYKNLVFTVTFFAGIFQAAFGLFRLGFLVDFLSHAAIVGFMGGAAIVIGLQQLKGLLGITHFTNKTDILSVMEAVFGSFHHHNHQWNPFNFIIGSSFLSFILITKLLVSLQGKKYKKVFWLAAIAPLLCVILSTLLVFLTRADQHGVKIVKRVPAGLNPISARHIQIHSPHFSQILNAAIIVAVVALTEAIAVGRSLASMKGYNIDGNREMVALGFMNLAGSLTSCYAATGSLSRSAVNFSAGCETAVSNVVMAVTVMISLEMFTKLLYFTPNAILASIILSALPGLIDLHQAYNIWKIDKLDFLACIAAFFGVLFLSVEFGLLLSLVISFAKIIVISIKPGTEILGKLPGTDTFCDIHQYPMALNTPGVLIIRVKSGLLCFANANFVKHRIMRFISSQEDSSAKRITHFLVIDLSNLMNIDTSGIASLEELQTSLAASGIELKGRVFLSVGEAVDACLSAKMGAI 638
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1946016 1955461 + Lsi07G001800.1 Lsi07g00180 666602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00180 638 PANTHER SULFATE TRANSPORTER 25 635 IPR001902 GO:0015301|GO:0016020|GO:0055085
Lsi07g00180 638 CDD STAS_SulP_like_sulfate_transporter 533 615 - -
Lsi07g00180 638 ProSiteProfiles STAS domain profile. 549 615 IPR002645 -
Lsi07g00180 638 SUPERFAMILY SpoIIaa-like 540 616 IPR036513 -
Lsi07g00180 638 TIGRFAM sulP: sulfate permease 80 616 IPR001902 GO:0015301|GO:0016020|GO:0055085
Lsi07g00180 638 PANTHER SULFATE TRANSPORTER 2.2 25 635 IPR030315 GO:0008272|GO:0015116
Lsi07g00180 638 MobiDBLite consensus disorder prediction 1 33 - -
Lsi07g00180 638 Pfam Sulfate permease family 93 481 IPR011547 GO:0016021
Lsi07g00180 638 MobiDBLite consensus disorder prediction 1 23 - -
Lsi07g00180 638 Pfam STAS domain 533 615 IPR002645 -
Lsi07g00180 638 Gene3D STAS domain 512 633 IPR036513 -
Lsi07g00180 638 ProSitePatterns SLC26A transporters signature. 122 143 IPR018045 GO:0008271|GO:0008272
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00180 Lsi-Chr7:1946016 Lsi09g00958 Lsi-Chr9:12471673 0 dispersed
Lsi07g00180 Lsi-Chr7:1946016 Lsi02g02261 Lsi-Chr2:29179045 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00180 K17469 - csv:101213063 1056.59