Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00186 ATGAACTCATCATCAACTAAATTTTACAATCCAGGAAGGATGGAATTGTATGAACCTATTCACCATATTGGAATGTGGGGAGAAACTTTTAGAACCAATGCCAATTTAGATGCACAATCCTCTTTTATCATTCAAGCTGATACCAAGTTAGAAAATCAGGTAGATTCAGATGATGCTTCACTCGGTTCACTTGGAGATCCTCATGTATATGACCAAGATGATACCAAACGTATTGACAAGGCTTATATTAAGCAATTGGAAACAAGCCGCTTAAAACTCATTCAATTGGAGCAAGAGCTTGAAAAGGCAAGACAACAAGGTCTCTTGGCTGGATCCCGATTTGATAATAACCAGTTGGGTTTATCAGGAACCACAAATTCAGGTCAAGTGTTTGTCGAATTGTCAACAATGAATATAAAGTCCAAAGTCTTAACCCAACATAGTTTGGATATTTTTGGGTGTATCCTCCAAAGCATCTCCGCATTTGAATCAGAGTATGATCAATGGGTGGAGGAGCAGAACAGGCAGATTTGTGATCTGAGGACTGCTGTGCATGCTGATATTACCGATATCGAGCTTCGAATACTCGTAGAAAATGCAATGAGACACTACTTTAAATTTTTTCGCATGAAAGCTAAAGCTGCAAAAGCCGATGTCTCTTACATAATGTCAGGCATGTGGAAAACATCAGCCGAAAGACTTTTCTTATGGATTGGAGGATTCCGACCTTCAGAACTCCTCAAGGTTTTGATACCTCAACTGGAGACATTAACCGAACAACAAAATTCGGAAACTGGTAGCCTTAGGAAATCTTGTCTACAAGCAGAAGATGCTCTTAGACAAGGTATGGAAAAACTACAACAAAATCTATTTGAGAGCGTAGTGGCTGGTCAGCTAGGTGAAGGAAGTCATCCGCTACAAATGACTGCTGCAATGGAGAGATTAGAAGCGCTCATTAGCTTTGTGAATCAGGAAACATTGCAACAGATGTACAAAATTCTAACAACTCGACAATCTGCTCAAGGCCTTCTTATTCTCGGGGAGTTTTTCCAACGACTCCGAGCATTGAGCTCACTTTGGGCTAATCGTCCTTGTGAGCCTGCATAG 1107 40.47 MNSSSTKFYNPGRMELYEPIHHIGMWGETFRTNANLDAQSSFIIQADTKLENQVDSDDASLGSLGDPHVYDQDDTKRIDKAYIKQLETSRLKLIQLEQELEKARQQGLLAGSRFDNNQLGLSGTTNSGQVFVELSTMNIKSKVLTQHSLDIFGCILQSISAFESEYDQWVEEQNRQICDLRTAVHADITDIELRILVENAMRHYFKFFRMKAKAAKADVSYIMSGMWKTSAERLFLWIGGFRPSELLKVLIPQLETLTEQQNSETGSLRKSCLQAEDALRQGMEKLQQNLFESVVAGQLGEGSHPLQMTAAMERLEALISFVNQETLQQMYKILTTRQSAQGLLILGEFFQRLRALSSLWANRPCEPA 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2038467 2046048 + Lsi07G001860.1 Lsi07g00186 666608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00186 368 PANTHER TRANSCRIPTION FACTOR TGA1 80 367 - -
Lsi07g00186 368 PANTHER TRANSCRIPTION FACTOR TGA1 1 80 - -
Lsi07g00186 368 Coils Coil 83 106 - -
Lsi07g00186 368 ProSiteProfiles DOG1 domain profile. 159 363 IPR025422 GO:0006351|GO:0043565
Lsi07g00186 368 PANTHER TRANSCRIPTION FACTOR TGA9 80 367 - -
Lsi07g00186 368 PANTHER TRANSCRIPTION FACTOR TGA9 1 80 - -
Lsi07g00186 368 Pfam Seed dormancy control 176 251 IPR025422 GO:0006351|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00186 Lsi-Chr7:2038467 Lsi08g00928 Lsi-Chr8:17665259 4.38E-69 dispersed
Lsi07g00186 Lsi-Chr7:2038467 Lsi03g00118 Lsi-Chr3:1664079 4.74E-33 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00186 K14431 - csv:116401613 584.334