Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00190 ATGGAATCGCCTCACGTTTTGGAGGGAGGAGCTATGAAGAAACGGCTAAATGGGGGTTTGGTCTTGCTCTGGTTCATCTTTGTCGGGCAATTCTGTACCAATGCCTCTGCAACTGTAGAAGCTACTGTTCTGCATATATTTCGATTGAATTTGGAAGATCCAAACAATGTTCTGCAGAGTTGGGACCCTACCCTTGTTAATCCCTGCACTTGGTTTCATGTCACTTGCAACAATGAAAATAACATTATAAGAGTCGACCTTGGAAATGCTGGATTGTCTGGTAAATTAGTACCACAGCTTGGTCAACTTAAAAGTCTTCAATACTTGGAGCTCTATGGCAACGACATCAGTGGAGAGATTCCAGATGATCTTGGGAATCTGGAAAATTTGGTGAGCCTAGACCTTTACTTGAACGGTTTAACTGGCCCGATTCCAGACACATTTGGCAAGCTCACACAATTGCGTTTCCTGTATGAACATTCATCCTTTGTTCTATCATTTGTGATATCTCGGCTAAATGACAACAAACTATCTGGCTTGATACCGATTTCCTTGACTAATATTTCCACCCTGCAAGTCTTGGATCTATCAAACAACCTTTTAGCTGGAAAGGTTCCAAATAATGGCTCATTTTCACTATTTACTCCCATCAGGTATTTTGCTGATAAATCACATGAACTTTCTTCTGGATCAAATGTTAGCCGATACAATACTGACTGCTATCACACTGTTTGTAGTTTTGCAAATAATTTGGATCTATGTGGTCTGGTAACTGGGAAACCTTGCCCTGGGGATCCTCCCTTTTCTCCACCGCCGCCATTTGTTCCACAGTCAACATTTTCTTCCCATGAAGTAAACAATCCCAATGGAGCAATTGTTGGAGGAGTTGCTGCAGGTGCTGCTTTACTTTTTGCCACTCCGGCTATCATATTCGTCTATTGGCATCGGAGGAGATCACGAGAATTATTCTTTGATGTCCCTGCGGAAGAAGATTCAGAGATCAACTTGGGGCAGCTGAAACGGTTTTCTCTGAGAGACTTACAAGTTGCAACAGATAACTTCTGCAACAAAAATATTCTCGGTCGAGGTGGATTCGGTAAAGTCTATAGGGGACGTCTGGCTGATGGCTCATTAGTAGCAGTAAAAAGGCTCAAAGAAGAGCGTACGCCAGGTGGAGAGTTGCAGTTCCAAACAGAGGTAGAGATGATTAGCATGGCGGTGCATCGGAATCTTCTGCGACTACACGGATTTTGTACAACATCAAGTGAACGCCTCCTTGTTTATCCTTATATGGCCAACGGAAGTGTTGCATCATGTTTAAGAGCTGGTATATTTTTCATAGAACGTCCACAATCTGAAGCTCCTCTCGACTGGCCAACTCGGAAGAAAGTTGCATTAGGTTCTGCCAGGGGCCTTTCTTATTTACATGATGGATGTGATCCAAAAATCATCCATCGTGATGTGAAGGCTGCAAATATTTTACTGGATGAGGAATTCGAGGCTGTTGTGGGCGATTTTGGTCTTGCAAAGTTAATGGACTACAAGGATACTCATGTTACAACGGCAGTAAGAGGTACTATTGGGCATATAGCTCCAGAGTATCTCTCAACTGGGAAATCGTCTGAAAAGACTGATGTTTTTGGTTATGGCATTATGCTCTTGGAGCTAATAACCGGTCAGAGGGCTTTTGATCTTGCTCGACTAGCAAACGATGAAGATGTTATGCTGCTTGATTGGGTCAAAGGCCTTCTGAAAGAGAAAAAGTTGGAGATGTTGGTTGACCCTGATCTGAAGCACAACTATGATGAAATTGAAGTTGAGCAAATAATCCAAGTAGCACTTCTCTGCACACAGAGCTCGCCTATGGAACGACCGAAAATGTCTGATGTGGTCAGAATGCTCGAAGGAGACGGCTTGACTGAGCGATGGGAGGAATGGCAGAGAGTCGAGGTAGTCTATCATGAAACCGAATTGGCATCTTCTCAAACTTCTGAATGGGTGGTCGATTCGACTGAAAACGTTCGTGCTTTCGAGTTGTCTGGTCCTAGATAA 2052 43.37 MESPHVLEGGAMKKRLNGGLVLLWFIFVGQFCTNASATVEATVLHIFRLNLEDPNNVLQSWDPTLVNPCTWFHVTCNNENNIIRVDLGNAGLSGKLVPQLGQLKSLQYLELYGNDISGEIPDDLGNLENLVSLDLYLNGLTGPIPDTFGKLTQLRFLYEHSSFVLSFVISRLNDNKLSGLIPISLTNISTLQVLDLSNNLLAGKVPNNGSFSLFTPIRYFADKSHELSSGSNVSRYNTDCYHTVCSFANNLDLCGLVTGKPCPGDPPFSPPPPFVPQSTFSSHEVNNPNGAIVGGVAAGAALLFATPAIIFVYWHRRRSRELFFDVPAEEDSEINLGQLKRFSLRDLQVATDNFCNKNILGRGGFGKVYRGRLADGSLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLHGFCTTSSERLLVYPYMANGSVASCLRAGIFFIERPQSEAPLDWPTRKKVALGSARGLSYLHDGCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDEDVMLLDWVKGLLKEKKLEMLVDPDLKHNYDEIEVEQIIQVALLCTQSSPMERPKMSDVVRMLEGDGLTERWEEWQRVEVVYHETELASSQTSEWVVDSTENVRAFELSGPR 683
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2064152 2068629 - Lsi07G001900.1 Lsi07g00190 666612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00190 683 SMART serkin_6 354 634 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi07g00190 683 Pfam Leucine rich repeat N-terminal domain 43 77 IPR013210 -
Lsi07g00190 683 PANTHER - 241 683 - -
Lsi07g00190 683 ProSitePatterns Serine/Threonine protein kinases active-site signature. 483 495 IPR008271 GO:0004672|GO:0006468
Lsi07g00190 683 PANTHER - 21 220 - -
Lsi07g00190 683 Gene3D Transferase(Phosphotransferase) domain 1 431 654 - -
Lsi07g00190 683 ProSiteProfiles Protein kinase domain profile. 354 647 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi07g00190 683 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 21 220 - -
Lsi07g00190 683 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 241 683 - -
Lsi07g00190 683 Pfam Protein tyrosine and serine/threonine kinase 357 634 IPR001245 GO:0004672|GO:0006468
Lsi07g00190 683 Gene3D Ribonuclease Inhibitor 37 263 IPR032675 -
Lsi07g00190 683 SUPERFAMILY L domain-like 40 209 - -
Lsi07g00190 683 Gene3D Phosphorylase Kinase; domain 1 323 430 - -
Lsi07g00190 683 ProSitePatterns Protein kinases ATP-binding region signature. 360 382 IPR017441 GO:0005524
Lsi07g00190 683 SUPERFAMILY Protein kinase-like (PK-like) 334 635 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00939 Lsi-Chr3:17977854 Lsi07g00190 Lsi-Chr7:2064152 0 dispersed
Lsi07g00151 Lsi-Chr7:1615746 Lsi07g00190 Lsi-Chr7:2064152 0 dispersed
Lsi07g00190 Lsi-Chr7:2064152 Lsi08g00259 Lsi-Chr8:5908203 0 dispersed
Lsi08g00261 Lsi-Chr8:5944228 Lsi07g00190 Lsi-Chr7:2064152 1.07E-12 dispersed
Lsi10g00780 Lsi-Chr10:10650857 Lsi07g00190 Lsi-Chr7:2064152 1.64E-154 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83763 PF00069 Pkinase 8.00E-43 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00190 K13418 - csv:101208905 1086.63