Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00191 ATGCTCGCCACCGCCGTCAGCCCCGTCGGCAGCCCCACCTCCGGAAACATCTCGGACAGCTCCACAAAAGAACAGGACAGGTTCCTTCCGATCGCAAACGTGAGCCGAATCATGAAAAAATCCCTTCCGGCGAATGCCAAAATCTCAAAAGAAGCGAAAGAGACCGTCCAGGAATGTGTGTCGGAGTTCATCAGCTTCATCACCGGCGAGGCCTCCGACAAGTGCCAAAGGGAAAAACGGAAGACGATCAACGGAGACGATTTGTTGTGGGCGATGACTACTTTGGGATTCGAAAATTACGTCGGCCCTTTGAAGATTTATCTCAACAAATACAGAGAAACAGAGGAAGAGAAACATTCTTTAGCCAGACAGGATGATCCCTCCCTCTCTCCGGCTAAATCCGCCTCCGAACAAATTATTGGTGGGAAATCGGCGAATTCGGTGATGGATTTTCAGAATTTCAATTCTGGGTATTATTCATTGGAGAATCAAAATCAAAATCAGGGCAACCAGAAGAGTTTCAATATAATCGATGGCGTTGGATTTGGGGAAAGTTTGAGGGCTTTCAATATGAATGGAAAAATATTCTCTATCATGTATAATGTTATACTTTTGTAA 618 45.47 MLATAVSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEEEKHSLARQDDPSLSPAKSASEQIIGGKSANSVMDFQNFNSGYYSLENQNQNQGNQKSFNIIDGVGFGESLRAFNMNGKIFSIMYNVILL 205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2084961 2087578 + Lsi07G001910.1 Lsi07g00191 666613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00191 205 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-11 12 173 - -
Lsi07g00191 205 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 12 173 IPR027113 GO:0001228|GO:0006355|GO:0016602
Lsi07g00191 205 Coils Coil 104 124 - -
Lsi07g00191 205 ProSitePatterns NF-YB/HAP3 subunit signature. 59 75 IPR003956 GO:0005634|GO:0006355|GO:0043565
Lsi07g00191 205 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 28 92 IPR003958 -
Lsi07g00191 205 PRINTS CCAAT-binding transcription factor subunit A signature 94 112 - -
Lsi07g00191 205 PRINTS CCAAT-binding transcription factor subunit A signature 75 93 - -
Lsi07g00191 205 PRINTS CCAAT-binding transcription factor subunit A signature 56 74 - -
Lsi07g00191 205 MobiDBLite consensus disorder prediction 7 23 - -
Lsi07g00191 205 Gene3D Histone, subunit A 15 153 IPR009072 GO:0046982
Lsi07g00191 205 SUPERFAMILY Histone-fold 25 127 IPR009072 GO:0046982
Lsi07g00191 205 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00494 Lsi-Chr5:6245182 Lsi07g00191 Lsi-Chr7:2084961 2.75E-57 dispersed
Lsi05g00511 Lsi-Chr5:6412401 Lsi07g00191 Lsi-Chr7:2084961 1.70E-44 dispersed
Lsi06g00125 Lsi-Chr6:1215709 Lsi07g00191 Lsi-Chr7:2084961 1.03E-32 dispersed
Lsi07g00191 Lsi-Chr7:2084961 Lsi10g00042 Lsi-Chr10:648177 2.00E-63 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25587 PF00808 CBFD_NFYB_HMF 5.60E-27 CL0012 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00191 K08065 - csv:116406241 357.836