Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00195 ATGGTGCACAGTGCTTACGATTCCTTCGAGCTACTCAAGGATAATCCCTCCAAAATCGAATCCATCGAGTCTTACGGCTCCAAGCTTTTCATCGGTTGTTCCGATGGATCTCTTCGTATCTACTCCCCAAATTCCTCCGGTTCCGACCGCTCTCTCTCGTCTGATTTCCACTCCAAGTCGATGGAGTTGCAAAAGGAACCATATGTACTGGAGAAGAACGTGTCCGGGTTCTCTCGTCGGTCTTTGGTTTCAATGGAGGTCATTGATTCGAGGGAGCTCCTTTTGACTCTCTCTGAATCAATCGCCTTTCACAAACTTCCCAATTTGGAGACTCTAGCCGTAATTACCAAGGCCAAGGGTGCCAATGCCTATTCCTGGGATGATCGCCGAGGCTTCTTGTGCTTCGCGAGGCAAAAGAGGGTCTGTATTTTCAGACACGACGGGGGGCGAGGATTCGTGGAGGTTAAAGAATTTGGTGTCCCTGACACGGTGAAGTCAATGTCTTGGTGTGGAGAAAATATATGTTTGGGAATTAAAAGAGAATACGTGATATTAAATGCTACCAGTGGCGCATTGACTGATGTATTCCCTTCTGGGAGGCTAGCCCCGCCTTTGGTAGTCTCCTTACCTTCTGGAGAACTTCTTCTTGGAAAGATTCGGTCTCTCCGGTCTCCATATGCGTTGATACAAACCATTGTTCTTCGAAATGGTCGGCATCTTATTGACAGTAAGCATGCTCTGGTTGTTGGATTAGACAATTCTGCTTATGGCCTCTTTCCTGTTCCTCTTGGCGCTCAGATTGTACAATTAACAGCATCTGGTAACTTTGAAGAAGCGTTGGCTCTGTGCAAGTTGCTTCCACCCGAAGATTCAAGCCTTCGATCTGCAAAGGAGAGTTCAATCCATATCAGATATGCTCACTATCTTTTTGATAATGGGAGCTACGAGGAGGCAATGGAACATTTTTTGGCATCTCAAGTGGATATAACCTATGTGCTTCCCTTTTGTCCTTCAATTATCCTTCCAAAGACGACTTTGATTACTGAAACAGAGAAATTTATGGATTTGGATGATCCTCATCTTTCAAGAGGTTCTTCAGGTTTTTCAGATGACATGGAGTCACCTCCACACCAGCTACTGGAATCTGATGAGAACACGTCACTGGAGTCAAAAAAAATGAACCATAATACTCTCATGGCTCTAATCAAGTTCTTGCAGAAGAAAAGGCACAACATTATTGAAAAGGCCACTGCTGAAGGGACAGAAGAGGTAGTTTTAGATGCTGTTGGAGACCGGTATAAGAAATCTTATAAGGGACGAGGGAACATCCCCATCAGCTCCGGTGCTAGGGAGATGGCTGCAATACTGGATACAGCACTACTTCAAGCTCTGCTTTTTACTGGACAATCATATGCAGCTTTGGAATTATTAAAAGGCCTGAATTACTGCGACGTAAAAATATGTGAAGAGATCCTTCAGAAAAATAAACATTACTCCGCACTGTTAGAGTTGTATAGGTGCAATTCTATGCATCGTGAAGCTCTAAAACTTTTGCATCAATTAGTAGAAGAGTCAAAAGCCAATGAGTCTCAAACTGAACTTATCCAAAAGTTCAAACCTGAAATGATCATTGACTATCTTAAGAACCACAGTAGGCGTTATGATAATGATCTCTGTACCCAGCATCCTTCTAGTCAAATTTACTTGACCCAAGGCTATATGCCACTATGTGGAACTGATCCCATGCTGGTCCTGGAATTTTCGATGACCGTTCTTGAAAGCTGTCCCACGCAAACTATTGAGCTCTTTCTTTCAGGAAATATTCCTGCAGACTTGGTCAATTCCTATTTGAAGCAACATGCTCCTAACTTGCAGGCAACATATTTGGAACTTATGCTTGCAATGAACGAGAGTTCAATTTCTGGAAATCTCCAAAATGAAATGCTTCAAATATATCTTTCGGAAGTTCTTGACTGGTATGCAGATTTGAGTGCTCAACATAAATGGGATGAAAAAACTTACTCCTCCACAAGAAAGAAGTTGTTGTCTGCTTTGGAGTCAATCTCAGGGTATCAGCCGGAGGTTCTATTAAAACGTCTTCCTTCCGATGCATTATCTGAAGAACGAGCAATTTTATTGGGGAAGATGAACCAGCATGAGCTTGCTTTATCTCTCTATGTTCATAAGATCCATGTTCCTGAGTTGGCACTGTCCTACTGTGATCGGGTTTATGAATCTGTAGCTAACCAGCAACCAACAAAATCTTCTGGCAATATTTACCTGACTCTTCTACAAATATACCTCAACCCCCGCAGAACGACAAAAAATTTTGAGAAGAGAATTACTAACTTAACATCTCCTCAAAATATGGGCACTCCAAAACTTGGGTCAGGTCCTTCATTCAAGGTTAAAGGAGGCCGTGCAGCTAAGAAAATTGCTGCAATAGAAGGTGCAGAAGACACAAAAATTAGTCTTAGTAACACTGACAGTAACAGGAGTGATGGCGACACAGATGAACCTGGTGAAGAAGTGACCTCTTCAATTATGCTTGATGAAGCTCTGGATCTGTTAAGCCAAAGGTGGGACAGAATTAATGGAGCACAGGCACTCAAACTTTTACCTAAGGAAACAAAGTTACAGAACTTGCTTCAATTTATTGGACCACTTTTAAGGAAATCCAGTGAGGCGTACAGGAACTCTTCAGTGATAAAGAGTTTGCGACAAAGTGAAAACTTGCAGGTGAGAGACGAACTCTATAACTATAGGAAACCTGCTATAAAAATAACCAGTGATAGCATGTGCTCCCTTTGCAAGAAGAAAATAGGGACGAGCGTTTTTGCAGTCTATCCGAACGGGAAAACACTTGTGCACTTTGTCTGCTTTAGAGACTCACAGAACATGAAGGCTGTGTCCAAGGATTCACCCATAAGAAGGCGTACATAG 2943 42.58 MVHSAYDSFELLKDNPSKIESIESYGSKLFIGCSDGSLRIYSPNSSGSDRSLSSDFHSKSMELQKEPYVLEKNVSGFSRRSLVSMEVIDSRELLLTLSESIAFHKLPNLETLAVITKAKGANAYSWDDRRGFLCFARQKRVCIFRHDGGRGFVEVKEFGVPDTVKSMSWCGENICLGIKREYVILNATSGALTDVFPSGRLAPPLVVSLPSGELLLGKIRSLRSPYALIQTIVLRNGRHLIDSKHALVVGLDNSAYGLFPVPLGAQIVQLTASGNFEEALALCKLLPPEDSSLRSAKESSIHIRYAHYLFDNGSYEEAMEHFLASQVDITYVLPFCPSIILPKTTLITETEKFMDLDDPHLSRGSSGFSDDMESPPHQLLESDENTSLESKKMNHNTLMALIKFLQKKRHNIIEKATAEGTEEVVLDAVGDRYKKSYKGRGNIPISSGAREMAAILDTALLQALLFTGQSYAALELLKGLNYCDVKICEEILQKNKHYSALLELYRCNSMHREALKLLHQLVEESKANESQTELIQKFKPEMIIDYLKNHSRRYDNDLCTQHPSSQIYLTQGYMPLCGTDPMLVLEFSMTVLESCPTQTIELFLSGNIPADLVNSYLKQHAPNLQATYLELMLAMNESSISGNLQNEMLQIYLSEVLDWYADLSAQHKWDEKTYSSTRKKLLSALESISGYQPEVLLKRLPSDALSEERAILLGKMNQHELALSLYVHKIHVPELALSYCDRVYESVANQQPTKSSGNIYLTLLQIYLNPRRTTKNFEKRITNLTSPQNMGTPKLGSGPSFKVKGGRAAKKIAAIEGAEDTKISLSNTDSNRSDGDTDEPGEEVTSSIMLDEALDLLSQRWDRINGAQALKLLPKETKLQNLLQFIGPLLRKSSEAYRNSSVIKSLRQSENLQVRDELYNYRKPAIKITSDSMCSLCKKKIGTSVFAVYPNGKTLVHFVCFRDSQNMKAVSKDSPIRRRT 980
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2117719 2130549 - Lsi07G001950.1 Lsi07g00195 666617

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00195 980 SUPERFAMILY WD40 repeat-like 11 215 IPR036322 GO:0005515
Lsi07g00195 980 MobiDBLite consensus disorder prediction 823 843 - -
Lsi07g00195 980 ProSiteProfiles Citron homology (CNH) domain profile. 16 354 IPR001180 -
Lsi07g00195 980 Pfam Vacuolar sorting protein 39 domain 2 854 962 IPR019453 -
Lsi07g00195 980 MobiDBLite consensus disorder prediction 784 803 - -
Lsi07g00195 980 Pfam Vacuolar sorting protein 39 domain 1 456 553 IPR019452 -
Lsi07g00195 980 PANTHER CNH DOMAIN CONTAINING 219 551 IPR032914 GO:0016192
Lsi07g00195 980 Pfam Region in Clathrin and VPS 612 742 IPR000547 GO:0006886|GO:0016192
Lsi07g00195 980 PANTHER VACUOLAR SORTING PROTEIN 39 574 979 - -
Lsi07g00195 980 PANTHER VACUOLAR SORTING PROTEIN 39 1 218 - -
Lsi07g00195 980 MobiDBLite consensus disorder prediction 364 388 - -
Lsi07g00195 980 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 600 776 IPR000547 GO:0006886|GO:0016192
Lsi07g00195 980 PANTHER VACUOLAR SORTING PROTEIN 39 219 551 - -
Lsi07g00195 980 PANTHER CNH DOMAIN CONTAINING 574 979 IPR032914 GO:0016192
Lsi07g00195 980 PANTHER CNH DOMAIN CONTAINING 1 218 IPR032914 GO:0016192
Lsi07g00195 980 Pfam CNH domain 28 216 IPR001180 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00195 K20183 VPS39, VAM6; Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39 - csv:101209397 1675.22
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01012 Lsi-Chr2:10365593 Lsi07g00195 Lsi-Chr7:2117719 2.79E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g968 . Blo16g00043 . . . Bpe13g00446 . . Cmo04g00844 Cmo16g00721 . . . . . . . . . . . . . . . . . . . . . Cone8ag0808 . . . . . Chy07g01300 . . . Bda11g01869 . . . . Bma06g00123 . . . Cma16g00663 . . . . Cpe14g00567 . . . . . . . Cla07g00878 Cam07g0950 Cec07g1016 Cco07g0995 Clacu07g0925 Cmu07g0924 Cre07g1293 Lsi07g00195 Csa04g00500 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008233 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 3 1 1 2 1 1 0 1 1 1 1 1 1 2 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi07g00195 Lsi_Chr07 FPKM 7.151021 8.198739 2.773761 3.025093 44.235817 42.96352 44.76273 4.613729 4.686916 4.598773