Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00198 ATGGGAAGTTTTCTTGCTGCAGATTGTGAATCATTGTTGATTGATATGTTTCGTTTAAAGAAGCATTCTCAAAGTCATAATCACCAGGATAATGATTCTACACAAGAAGATGGGAAGATCAATGAACTTAGAGCTGCTCTAGGGCCTCTGTCTAGTCGAAGTTTAAAGTATTGCAGCGATGCATGTCTGAGGAGATATTTGGTAGCTCGAAACTGGAATGTTGAAAAGTCCAGGAAAATGCTCCAAGAGACGCTCAAGTGGAGGGCAGCTTACAAGCCGGAAGAAATCCGTTGGCATGAAGTAGCATTTGAAGGCGAGACTGGGAAAGTGTCGAGAGCAAATTTTTACGATCGACGTGGAAGATCTGTGCTCATAATGAGACCAGGAATGCAGAACACAACTCCAACAGAAACTAGCGTGCAGCATCTGGTCTATCTTTTAGAGAATGCGATTCTGAACCTTGGTGAGGGTCAGGAACAAATGTGTTGGTTAATAGATTTCAGCGGATTTACAATGAAAACCAATGTCTCTGTCAAAATAGCCGCAGATATTATCAATATTTTGCAGAACCATTACCCCGAGAGACTTGCCTTTGCTTTCCTCTACAATCCACCCAAGATTTTTCAAGCCTTCTGGAAGGCTATAAAGTACTTCTTAGATCCGAAGACGTTTCAGAAGGTAAAGTTTGTAAATCCCAAAGACAAAGGAAGCGTGGAGCTGATGAAATCACACTTTGACATGGAAAACCTTCCCAGTGTCTTTGGGGGTAAAGCCACACTCGAATATGATCACCACCAGTTCTCCCAGATGATGTCCCAAGACGAGATTAAAGCTGCCCAGTTTTGGGGCTTTGATGAGAAGGCCCATGATCACATTGTAAATGGGCCTTCTTCTGGCCCAGAAGTTGCACCAGAGCCCCTTACTTCAACTAATTGA 936 43.06 MGSFLAADCESLLIDMFRLKKHSQSHNHQDNDSTQEDGKINELRAALGPLSSRSLKYCSDACLRRYLVARNWNVEKSRKMLQETLKWRAAYKPEEIRWHEVAFEGETGKVSRANFYDRRGRSVLIMRPGMQNTTPTETSVQHLVYLLENAILNLGEGQEQMCWLIDFSGFTMKTNVSVKIAADIINILQNHYPERLAFAFLYNPPKIFQAFWKAIKYFLDPKTFQKVKFVNPKDKGSVELMKSHFDMENLPSVFGGKATLEYDHHQFSQMMSQDEIKAAQFWGFDEKAHDHIVNGPSSGPEVAPEPLTSTN 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2144750 2150352 - Lsi07G001980.1 Lsi07g00198 666620

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00198 311 SMART sec14_4 104 259 IPR001251 -
Lsi07g00198 311 PANTHER GH16843P 22 308 - -
Lsi07g00198 311 Pfam CRAL/TRIO domain 116 256 IPR001251 -
Lsi07g00198 311 Pfam CRAL/TRIO, N-terminal domain 58 83 IPR011074 -
Lsi07g00198 311 PANTHER DIVERGENT CRAL/TRIO DOMAIN PROTEIN 22 308 - -
Lsi07g00198 311 CDD SEC14 117 257 IPR001251 -
Lsi07g00198 311 Gene3D - 14 290 IPR036865 -
Lsi07g00198 311 SUPERFAMILY CRAL/TRIO domain 98 270 IPR036865 -
Lsi07g00198 311 SMART CRAL_TRIO_N_2 59 84 IPR011074 -
Lsi07g00198 311 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 116 262 IPR001251 -
Lsi07g00198 311 SUPERFAMILY CRAL/TRIO N-terminal domain 26 100 IPR036273 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00198 - - - csv:101209886 545.814
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi01g00678 Lsi07g00198 CCT
Lsi01g00678 Lsi07g00198 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00678 Lsi-Chr1:5460332 Lsi07g00198 Lsi-Chr7:2144750 2.33E-125 dispersed
Lsi04g02351 Lsi-Chr4:30690052 Lsi07g00198 Lsi-Chr7:2144750 9.67E-64 dispersed
Lsi05g01598 Lsi-Chr5:23717290 Lsi07g00198 Lsi-Chr7:2144750 1.05E-16 dispersed
Lsi07g00198 Lsi-Chr7:2144750 Lsi07g00394 Lsi-Chr7:4212826 9.72E-23 dispersed
Lsi10g01362 Lsi-Chr10:17797815 Lsi07g00198 Lsi-Chr7:2144750 1.40E-08 dispersed
Lsi07g00198 Lsi-Chr7:2144750 Lsi04g01657 Lsi-Chr4:24041024 1.54E-137 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g966 . Blo16g00041 Bda04g00051 . . Bpe13g00448 . . . Cmo16g00717 Cma03g00753 . Car03g00688 . Sed14g1112 . Cpe10g00609 Bhi03g01289 Tan03g1975 Cmetu08g2019 . Hepe04g1507 . . Cla01g01903 Cam01g1992 Cec04g1644 Cco04g1707 Clacu01g2012 Cmu01g1883 Cre04g1561 Cone8ag0807 . . Cone9ag1544 Lsi01g00678 . Chy07g01296 Cme08g00844 Blo05g00795 . Bda11g01871 . . Bpe06g00046 . Bma06g00125 . Cmo03g00781 . Cma16g00660 . . . . Cpe14g00563 . . . . . . . Cla07g00874 Cam07g0946 Cec07g1013 Cco07g0991 Clacu07g0921 Cmu07g0921 Cre07g1290 Lsi07g00198 Csa06g03236 Chy02g00653 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001039 2 5 1 1 2 3 2 3 3 3 3 3 3 3 3 3 3 3 3 3 3 2 3 3 2 3 3 3 3 2 82
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi07g00198 Lsi_Chr07 FPKM 0.0 0.0 0.0 0.0 6.822209 6.128469 7.375306 0.0 0.0 0.0