Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00202 ATGGCTTCTTCTTCTTCTTCTCCTAATTTCTCCTTCGGGATTTCTGCTTCTGCCTTCTCTGACCCTTTTCAGGTCGCCGGACCCCCCGATTCTGCCGACCCCTCTTTTCATTTCTCTAATTTGGACCACCCTTCTGCCGGCTTTAGATTCTTCCCTAATTTTGGCGCCGCCCCCGGTGGAGAGTTTGAATCTGATGAGTGGATGGATAGTTTAGTAGGCGGCGGAGATTCCAGCGACGCTTACGGTGAGTTTGGTCTCTATGGTGCGGATCCATTTAATGGCTCTCCGCCGGCTGAGTTCAACCGAGTTGTTCTTCCCGAAAGTTCGTACAAGTTGAATGGTGTTCTGCCACCATGGCCGTCATCTCCATCACTGGTCAAGGATGAGAGTGTAACCAATCCACCGGTGGAGAGGCCGGTGAAGAATGACGTCGTTGAAGGCTCGTCGAGTGCACTGGAAGTTGAGTCATCGCCGCTGCCGCCGTCGCCGCTTCTGAAAGTCTTGCTCGATTGTGCGCGGCTCTGCGATTCCGAACCTAACCGAGCAGCGAAAACTCTTAATCAGATTAGTAAATCGTTACGAGAAGATGGAGATCCGATTGAACGAGTGGCGTTTTACTTTGGCGAGGCTCTTCGGAAGAAATTATCCTTGACGGCGATGAAGAATTGCTTGGATACAACTGAGAGCGATGCTAATTCTGAAGATTTCTTGCTCTCTCACAAAGCTCTGAACGACGCCTGTCCTTACTCCAAGTTCGCGCATCTCACGGCCAACCAAGCAATTCTGGAAGCTACGCAGAGAGCAAGTAAAATTCACATTGTCGACTTCGGAATCGTTCAGGGCGTTCAATGGGCAGCGCTTCTGCAGGCTTTGGCCACGCGAGCCGCCGGAAAGCCTATCAGAGTTCGTATCTCCGGAATACCAGCGCCATCGCTCGGAGACTCACCGGCAGCGTCTCTATATGCCACTGGCAATAGACTCTCCGAGTTCGCAAAGCTTCTAGAACTGAATTTCGAGTTCGAACCGATTCTAACGCCGATTGAGAACCTGAACGAATCTAGCTTCAGCGTTCAATCAGACGAGGTATTGGCCGTCAATTTCATGCTTCAATTGTACAATCTCCTCGACGAGGATCCAGCTAGAGTTCATAATGCTCTTCGATTAGCAAAATCGTTGAGCCCTCAAATAGTGACTCTCGGCGAGTACGAGGCGAGTGTGAACCGGATCGGATTCTACAATCGCTTCAAGAACGCATTGAAATTCTACTCCGCCATTTTCGAATCGCTTGAGCCGAACTTGCCTCGAGACTCGCCAGAAAGACTCCAGTTAGAAAAACTGTTACTCGGCCGTCGAATCGCCGGCGTGGTTGGAACCGAAGAAGATTCAAGAAGCAAAAGAAGAGTACGCATGGAAGACAAAGAACAATGGAAGAATTTGATGGAAAGCGCCGGATTCGAACCGGTAGTGTTCAGCCATTACGCCATTAGTCAGGCGAAAATACTTTTATGGAACTACAATTACAGTTCTCTCTACACTTTGATCGAATCGGCGCCGGAGTTTCTGTCTCTGGCATGGAACGACGTTCCTCTCTTAACTGTATCTTCCTGGCGTTGA 1614 49.81 MASSSSSPNFSFGISASAFSDPFQVAGPPDSADPSFHFSNLDHPSAGFRFFPNFGAAPGGEFESDEWMDSLVGGGDSSDAYGEFGLYGADPFNGSPPAEFNRVVLPESSYKLNGVLPPWPSSPSLVKDESVTNPPVERPVKNDVVEGSSSALEVESSPLPPSPLLKVLLDCARLCDSEPNRAAKTLNQISKSLREDGDPIERVAFYFGEALRKKLSLTAMKNCLDTTESDANSEDFLLSHKALNDACPYSKFAHLTANQAILEATQRASKIHIVDFGIVQGVQWAALLQALATRAAGKPIRVRISGIPAPSLGDSPAASLYATGNRLSEFAKLLELNFEFEPILTPIENLNESSFSVQSDEVLAVNFMLQLYNLLDEDPARVHNALRLAKSLSPQIVTLGEYEASVNRIGFYNRFKNALKFYSAIFESLEPNLPRDSPERLQLEKLLLGRRIAGVVGTEEDSRSKRRVRMEDKEQWKNLMESAGFEPVVFSHYAISQAKILLWNYNYSSLYTLIESAPEFLSLAWNDVPLLTVSSWR 537
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2173708 2175321 - Lsi07G002020.1 Lsi07g00202 666624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00202 537 Pfam GRAS domain family 165 537 IPR005202 -
Lsi07g00202 537 MobiDBLite consensus disorder prediction 122 141 - -
Lsi07g00202 537 ProSiteProfiles GRAS family profile. 155 537 IPR005202 -
Lsi07g00202 537 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 165 536 IPR005202 -
Lsi07g00202 537 PANTHER SCARECROW-LIKE PROTEIN 4-RELATED 165 536 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi01g00680 Lsi07g00202 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00680 Lsi-Chr1:5478459 Lsi07g00202 Lsi-Chr7:2173708 0 dispersed
Lsi07g00202 Lsi-Chr7:2173708 Lsi03g00413 Lsi-Chr3:4715972 2.48E-61 dispersed
Lsi07g00202 Lsi-Chr7:2173708 Lsi10g00057 Lsi-Chr10:977937 2.92E-58 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25588 PF03514 GRAS 7.30E-109 CL0063 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00202 - - csv:101211368 878.241