Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00203 ATGTGGCGCTGTGTTTCTCGTGGTCTTCGCGCTTCTTCCTTCTCCAGGAAATCGTCCCCCAATGATCACCTCAGATCTCAATTTTCTAGATTCTTCTCCGTCGATTCGACAGCAGGTCGCTCCTCATACACTGTGGTTGATCACACATACGATGCGGTTGTGGTAGGCGCGGGTGGTGCAGGGCTTCGAGCTGCTATAGGATTGTCAGAGCATGGATTTAATACTGCTTGCATTACTAAGCTTTTCCCAACTCGTTCTCACACGGTTGCAGCTCAGGAGTTTACTTTCTCTCATCTTTCATTGGTTGGTCTTCCAGCCCAAATCAACTCCCTTGAAGAACAGAACATTCAGACTGAAAACCTGCTTGGACAGAGGCTGGGAGGTATAAATGCTGCACTGGGAAACATGACTGAGGATGATTGGAGGTGGCACATGTACGACACTGTCAAGGGGAGTGATTGGCTAGGTGATCAGGATGCCATTCAATACATGTGTAGAGAAGCACCAAAAGCAGTAATTGAGCTTGAGAATTATGGACTTCCATTTTCTCGTACTGAAGATGGAAAAATTTATCAACGTGCATTTGGTGGTCAGAGCCTCGACTTTGGCAAGGGTGGACAGGCATATCGTTGTGCATGTGCTGCTGATCGAACAGGGCATGCTTTATTGCATACTCTCTATGGCCAGGCTATGAAGCATAACACACAGTTCTTTGTGGAATATTTTGCTTTGGATCTATTAATGAATAGTGATGGTAGCTGCCAGGGAGTGATAGCATTAAATATGGAGGACGGTACACTACATCGGTTCCGAGCTGCCTCAACAATTTTGGCTACCGGGGGTTATGGCAGAGCATATTTCTCTGCAACCTCTGCTCATACATGCACTGGAGATGGAAATGCCATGGTTGCACGAGCCGGGATTCCACTTGAGGATTTGGAGTTTGTGCAGTTTCATCCAACGGGAATATATGGTGCTGGGTGCCTTATTACTGAAGGATCTCGTGGTGAAGGTGGCATTCTTAGGAACAGCGAAGGTGAGCGCTTTATGGAACGATATGCCCCAACAGCAAAGGATCTTGCATCAAGGGATGTTGTCTCAAGATCCATGACTATGGAAATTCGGGAGGGCCGTGGTGTAGGACCACTGAAGGACCACATCTATCTGCATTTAAATCACTTGCCCCCAGATGTACTGAAGGAGAGACTTCCGGGTATCTCAGAAACTGCTGCCATTTTTGCTGGCGTTGATGTTACCAAAGAACCCATTCCAGTCTTACCCACAGTGCACTATAATATGGGTGGAATTCCCACGAATCATTATGGAGAGGTAGTTACAATCAAGGGAAATGATCCAGATGCCGTTATTCCAGGATTGATGGCTGCTGGGGAGGCAGCTTGTGCCTCGGTTCATGGTGCCAATAGGCTTGGTGCAAATTCGCTTTTGGACATTGTTGTCTTTGGACGAGCTTGTGCCAATAGGGTAGCAGAGATCAGTAGACCAGGCAAGTTTGTTTGTTTGTTTTTCGGGGCACAGCAAAAGCCGTTGGAAAAAGATGCTGGTGAGAAGACTATTGCATGGCTAGACAAATTGAGAAACTCAAATGGTTCACTGCCAACCTCAAAGATTCGGTTGAACATGCAACGAGTTATGCAAAACAATGCTGCTGTTTTCCGAACACAGGAGACCTTGGAAGAAGGTTGCAAATTAATTGACAAGGCCTGGGAGAGTTTCCATGATGTGAAGGTCAAAGACAGGGACTTAATATGGAACACTGATTTGATGGAGACAATTGAATTGGAAAATCTTTTGATAAATGCATGTATTACCATGCACTCTGCTGAAGCAAGGAAAGAGAGCAGAGGAGCACATGCTCGGGAAGATTTCACAAAAAGAGATGATGAGAACTGGATGAAGCACACACTGGGATTCTGGGAGAATGAGAAGGTCAGACTGGACTATAGGCCAGTGCACCTGAACACATTGGATGATGAGGTCGAATCATTCCCTCCCAAGGCTCGTGTATACTGA 2031 46.28 MWRCVSRGLRASSFSRKSSPNDHLRSQFSRFFSVDSTAGRSSYTVVDHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQEFTFSHLSLVGLPAQINSLEEQNIQTENLLGQRLGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHALLHTLYGQAMKHNTQFFVEYFALDLLMNSDGSCQGVIALNMEDGTLHRFRAASTILATGGYGRAYFSATSAHTCTGDGNAMVARAGIPLEDLEFVQFHPTGIYGAGCLITEGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPLKDHIYLHLNHLPPDVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHYGEVVTIKGNDPDAVIPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVAEISRPGKFVCLFFGAQQKPLEKDAGEKTIAWLDKLRNSNGSLPTSKIRLNMQRVMQNNAAVFRTQETLEEGCKLIDKAWESFHDVKVKDRDLIWNTDLMETIELENLLINACITMHSAEARKESRGAHAREDFTKRDDENWMKHTLGFWENEKVRLDYRPVHLNTLDDEVESFPPKARVY 676
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2184353 2193491 - Lsi07G002030.1 Lsi07g00203 666625

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00203 676 Gene3D - 127 492 IPR036188 -
Lsi07g00203 676 TIGRFAM sdhA_forward: succinate dehydrogenase, flavoprotein subunit 126 676 IPR011281 GO:0006099|GO:0016627|GO:0050660
Lsi07g00203 676 SUPERFAMILY Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 313 431 IPR027477 -
Lsi07g00203 676 Gene3D succinate dehydrogenase protein domain 627 676 - -
Lsi07g00203 676 TIGRFAM sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit 127 676 IPR014006 GO:0016627|GO:0022900|GO:0050660
Lsi07g00203 676 PANTHER SUCCINATE DEHYDROGENASE [UBIQUINONE] FLAVOPROTEIN SUBUNIT, MITOCHONDRIAL 2 93 - -
Lsi07g00203 676 PANTHER SUCCINATE DEHYDROGENASE [UBIQUINONE] FLAVOPROTEIN SUBUNIT, MITOCHONDRIAL 126 676 - -
Lsi07g00203 676 Gene3D - 516 626 - -
Lsi07g00203 676 PIRSF SDHA_APRA_LASPO 104 665 - -
Lsi07g00203 676 PIRSF SDHA_APRA_LASPO 41 91 - -
Lsi07g00203 676 SUPERFAMILY Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 535 676 IPR037099 GO:0016491
Lsi07g00203 676 Gene3D - 34 101 IPR036188 -
Lsi07g00203 676 Pfam FAD binding domain 127 481 IPR003953 -
Lsi07g00203 676 Pfam FAD binding domain 51 92 IPR003953 -
Lsi07g00203 676 Gene3D Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 323 426 IPR027477 -
Lsi07g00203 676 PANTHER SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT 126 676 IPR030664 -
Lsi07g00203 676 PANTHER SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT 2 93 IPR030664 -
Lsi07g00203 676 Pfam Fumarate reductase flavoprotein C-term 545 676 IPR015939 GO:0016491
Lsi07g00203 676 SUPERFAMILY FAD/NAD(P)-binding domain 42 506 IPR036188 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00203 K00234 SDHA, SDH1; succinate dehydrogenase (ubiquinone) flavoprotein subunit [EC:1.3.5.1] - csv:101211616 1229.54
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01565 Lsi-Chr2:21489930 Lsi07g00203 Lsi-Chr7:2184353 2.17E-64 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g958 . . . Bda10g00132 . . . Bma15g01000 Cmo04g00839 . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag1616 Cone9ag1541 . . Chy07g01293 . . Blo06g00133 . Bda14g01154 Bpe10g00117 . . . . . . . . . . . Cpe14g00560 . . . . . . . Cla07g00870 Cam07g0941 Cec07g1008 Cco07g0987 Clacu07g0917 Cmu07g0916 Cre07g1287 Lsi07g00203 Csa04g00508 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005005 3 1 1 1 1 2 2 1 2 1 2 2 1 1 1 1 2 2 2 2 1 0 1 1 1 1 1 2 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi07g00203 Lsi_Chr07 FPKM 25.388611 28.039318 41.216652 40.60796 21.674599 19.552801 21.291901 49.440552 52.910847 49.916714