Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00214 ATGTCCTTCTCCATCTCCACCCGCCACATCCGTCGCCTATCTACGGCAGCCACCGCCGCCGCCAACGCCACGGCAACGACGTCCTCTTCAATATCCATTTCAAAAGCGAAATCTAAACTAAGAACCGAGTATGATCCAGATAAAGCCCTCGACATTTACTCTTCTGTTTCCACTCACTACACCTCACATGTATCCTCTCGTTACGCTCAGGAACTAACCGTCCGGCGCCTTGCAAAGTCTCGTCGATTCGATGACATCGAATCACTAATCGAGTCCCATAAAAACGACCCGAAGATCACTCAGGAGCCTTTTTTGTCCACCCTGATTCGATCCTACGGTCGAGCTGGTATGTTCGAGCACGCTATGAGGACTTATAATCAAATGGGGGATTTAGGTACTCCTCGTTCCGCGATTTCCTTTAATGCCCTGTTATCTGCTTGTAACCATTCGAAGCAATTCGACAAGGTTCCTCAACTGTTCGACGAAATTCCCAAGAGATATAATTTCTCTCCCAATAAGATCTCGTACGGGATCCTGGTTAAGTCCTATTGCGACGCGGGTTCCCCTGAGAAGGCCATGCAGATTGTAAGACAGATGGAGGAAAATGGCGTGGAGGTAACTACGGTGACATTCACAACCATTTTAGATGCTCTGTACAAGAAGGGTGAGAGCGAAGAGGCAGATAAAATCTGGAACAAGATGATATCAAAAGGGTGTGAACTTGATGTGGGAGCCTATAATGTTAGATTGATGCACGAGCATGGTGGCCAGCCAGAGCATGTGCAAGCTTTAATCGAGGAAATGGCTAATTCAGGTTTGAAACCCGACACGATTAGTTATAATTACTTGATGACTTGTTATTGTAAGAATGTGATGATTGATGAAGCAAAGAAAGTGTATGATGATATGGAGGTTTATGGGTGTAATAAGAATGCTGCAACTTTTAGGACATTTATATATTATCTCTGTAGAAATGGGGAGTATGAGAAAGGGTATAAGGTTTTCAAGGAGAGTGTGAAGATGCATAAGATTCCTGATTTTAGCACAGTGAAGTATTTGGTGGAGGGGCTAGTGGAGAAGAAGAAGATGAAAGAAGCTAAGGGTTTAATCAGGACTATAAGGAAGAAGTTTCCTCCTGAATCTTTGAAGGCTTGGAGAAAAGTTGAGGAGAGTCTTGGTTTGGCTTCTGTTGCTGATGATGCTTCTTTTAAGGATGATGAAACTAAAACATGA 1233 43.88 MSFSISTRHIRRLSTAATAAANATATTSSSISISKAKSKLRTEYDPDKALDIYSSVSTHYTSHVSSRYAQELTVRRLAKSRRFDDIESLIESHKNDPKITQEPFLSTLIRSYGRAGMFEHAMRTYNQMGDLGTPRSAISFNALLSACNHSKQFDKVPQLFDEIPKRYNFSPNKISYGILVKSYCDAGSPEKAMQIVRQMEENGVEVTTVTFTTILDALYKKGESEEADKIWNKMISKGCELDVGAYNVRLMHEHGGQPEHVQALIEEMANSGLKPDTISYNYLMTCYCKNVMIDEAKKVYDDMEVYGCNKNAATFRTFIYYLCRNGEYEKGYKVFKESVKMHKIPDFSTVKYLVEGLVEKKKMKEAKGLIRTIRKKFPPESLKAWRKVEESLGLASVADDASFKDDETKT 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2283959 2285191 - Lsi07G002140.1 Lsi07g00214 666636

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00214 410 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 276 310 IPR002885 -
Lsi07g00214 410 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 207 241 IPR002885 -
Lsi07g00214 410 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 172 206 IPR002885 -
Lsi07g00214 410 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 311 345 IPR002885 -
Lsi07g00214 410 Pfam PPR repeat 106 132 IPR002885 -
Lsi07g00214 410 Gene3D Tetratricopeptide repeat domain 151 251 IPR011990 GO:0005515
Lsi07g00214 410 Gene3D Tetratricopeptide repeat domain 6 150 IPR011990 GO:0005515
Lsi07g00214 410 Gene3D Tetratricopeptide repeat domain 252 405 IPR011990 GO:0005515
Lsi07g00214 410 Pfam PPR repeat family 137 184 IPR002885 -
Lsi07g00214 410 Pfam PPR repeat family 207 248 IPR002885 -
Lsi07g00214 410 Pfam PPR repeat family 275 323 IPR002885 -
Lsi07g00214 410 PANTHER BNAA09G52830D PROTEIN 7 400 - -
Lsi07g00214 410 TIGRFAM PPR: pentatricopeptide repeat domain 106 132 IPR002885 -
Lsi07g00214 410 TIGRFAM PPR: pentatricopeptide repeat domain 138 172 IPR002885 -
Lsi07g00214 410 TIGRFAM PPR: pentatricopeptide repeat domain 314 342 IPR002885 -
Lsi07g00214 410 TIGRFAM PPR: pentatricopeptide repeat domain 209 243 IPR002885 -
Lsi07g00214 410 TIGRFAM PPR: pentatricopeptide repeat domain 174 207 IPR002885 -
Lsi07g00214 410 TIGRFAM PPR: pentatricopeptide repeat domain 278 310 IPR002885 -
Lsi07g00214 410 PANTHER MITOCHONDRIAL GROUP I INTRON SPLICING FACTOR CCM1 7 400 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00214 - - - cmo:103494372 690.263
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00214 Lsi-Chr7:2283959 Lsi07g00471 Lsi-Chr7:4971581 1.26E-69 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g942 . . . . . Bpe13g00453 . . . Cmo16g00710 . . . . . . . . . . . . . . . . . . . . . . . Cone6ag1611 Cone9ag1539 . . Chy07g01284 . . . Bda11g01875 . . . . Bma06g00129 . . . Cma16g00653 . . . . Cpe14g00557 . . . . . . . Cla07g00859 Cam07g0931 Cec07g0996 Cco07g0972 Clacu07g0905 Cmu07g0905 Cre07g1273 Lsi07g00214 Csa04g00517 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012727 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 0 1 1 1 1 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi07g00214 Lsi_Chr07 FPKM 19.443869 19.939369 12.011135 12.870635 17.011505 15.682794 15.833838 6.243304 6.625515 6.185701