Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi07g00216 | ATGCCAACGGACTTAGAAAATTCCTCCAACGCTTCTGGCGAATTCAGTATCTCCTCCTCTGGTAATCAGCCTCCGCCGCCCAAATCCGCCGTGAAAAAAAAGCGTAATTTACCCGGAATGCCAGATCCGGATGCAGAGGTAATTGCTCTGTCTCCGAAGACCCTTTTGGCCACAAATCGATTTGTGTGTGAAATTTGCAACAAAGGGTTTCAAAGAGATCAGAATCTGCAACTTCACCGGCGAGGTCACAATCTTCCATGGAAACTCCGGCAACGGACTAGCAAAGAGGTGAAAAAGAAAGTCTATGTCTGCCCGGAGCCGTCATGCGTCCACCACCATCCGTCGAGAGCTCTCGGCGATCTGACCGGAATAAAGAAGCACTTCTGCCGGAAGCACGGCGAGAAGAAGTGGAAGTGTGAAAAGTGCTCTAAAAAATACGCAGTCAAGTCCGATTGGAAGGCCCATTCTAAAATTTGTGGCACCAGAGAGTACAAATGCGACTGTGAGACTGTGTTTTCGAGAAGAGATAGTTTCATCACTCACAGAGCCTTCTGTGATGCGTTGACGAAGGAGGCTGCTGGAAGTTTGTCTCCGGCGGCGGCGGAGAATCCTAATTTGGAGTCCGATCCTCAAGTTCAGCCGTCGGATAGTTCGTCTCCGCCGCCTTCTGCTCCTCCTCTTTCCGCCGCTACCGGTGCCGCGCCAATAGCCCCTCCTCCATCCACTGACGCGATGTCATCAATCGCGTCCATTGAGAATAAAGCCTCACCGAAAAATCCTCCGATGCCGCTAGGAGAGGCACCAGGCAGAACTACCCTAACTGGAAATTCCGGCAGCAGCACCACCACAATCACTAGCAGCAACGCTGGTGCTTTGGCTAGCTTGTTTGCTTCCTCCGCCGCAACACTGAGCTTACAACCGCCGCAGCCACCTGCATTTTGTGACTTATTAAGAGCCATGGCGCGGCCTGATCGGGCGGCTGAAATTGCACCGCCGCTGGTTTTTGAACCTCTTTCGTTATGCCTATCGACCGACACCGAGTCGTCGCTTTTCAGAGCTGGAATCCAAGAGTGTCACCCATATGTGCCACCGACACCACCGTCCATGTCTGCCACCGGGCTCCTACAGAAGGCCGCTCAAATGGGCGTTGCAGCGGCGAGCGCATCAGTATTTCGTGGACTTGGTTTATCATCTTCCTCTTCTTCTGCACAACAGGGGAGTTTATAA | 1227 | 52.49 | MPTDLENSSNASGEFSISSSGNQPPPPKSAVKKKRNLPGMPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSKEVKKKVYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKKYAVKSDWKAHSKICGTREYKCDCETVFSRRDSFITHRAFCDALTKEAAGSLSPAAAENPNLESDPQVQPSDSSSPPPSAPPLSAATGAAPIAPPPSTDAMSSIASIENKASPKNPPMPLGEAPGRTTLTGNSGSSTTTITSSNAGALASLFASSAATLSLQPPQPPAFCDLLRAMARPDRAAEIAPPLVFEPLSLCLSTDTESSLFRAGIQECHPYVPPTPPSMSATGLLQKAAQMGVAAASASVFRGLGLSSSSSSAQQGSL | 408 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 2309547 | 2313212 | + | Lsi07G002160.1 | Lsi07g00216 | 666638 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi07g00216 | 408 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 61 | 83 | IPR013087 | - | |
| Lsi07g00216 | 408 | MobiDBLite | consensus disorder prediction | 270 | 284 | - | - | |
| Lsi07g00216 | 408 | SMART | c2h2final6 | 61 | 83 | IPR013087 | - | |
| Lsi07g00216 | 408 | SMART | c2h2final6 | 137 | 157 | IPR013087 | - | |
| Lsi07g00216 | 408 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 63 | 83 | IPR013087 | - | |
| Lsi07g00216 | 408 | Gene3D | Classic Zinc Finger | 41 | 108 | - | - | |
| Lsi07g00216 | 408 | PANTHER | ZINC FINGER PROTEIN GAI-ASSOCIATED FACTOR 1 | 1 | 403 | - | - | |
| Lsi07g00216 | 408 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 1 | 403 | - | - | |
| Lsi07g00216 | 408 | MobiDBLite | consensus disorder prediction | 196 | 284 | - | - | |
| Lsi07g00216 | 408 | Gene3D | Classic Zinc Finger | 130 | 193 | - | - | |
| Lsi07g00216 | 408 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
| Lsi07g00216 | 408 | SUPERFAMILY | beta-beta-alpha zinc fingers | 60 | 157 | IPR036236 | - | |
| Lsi07g00216 | 408 | Pfam | Zinc finger, C2H2 type | 61 | 83 | IPR013087 | - | |
| Lsi07g00216 | 408 | MobiDBLite | consensus disorder prediction | 1 | 44 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi06g00122 | Lsi-Chr6:1182292 | Lsi07g00216 | Lsi-Chr7:2309547 | 4.47E-104 | dispersed | |
| Lsi07g00216 | Lsi-Chr7:2309547 | Lsi08g01410 | Lsi-Chr8:22345397 | 1.38E-118 | dispersed | |
| Lsi07g00216 | Lsi-Chr7:2309547 | Lsi01g00694 | Lsi-Chr1:5544880 | 5.36E-163 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 25590 | PF00096 | zf-C2H2 | 0.0039 | CL0361 | Lsi | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi07g00216 | K25869 | - | csv:101215476 | 618.616 |