Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00218 ATGAGAGTTCCTGTTTCCAATCACCAATCATCCAATAACCCAATTCCTAAACTCCACTCCTCCCCTTCTACAATCGCCTTCCACACTCCCACCGCCGCCGCCTCAACCTGTTACGAACCCACCTCTGTCCTCGATCTCCGCCGCAGTCCTAGCCCCGTGGCGCAACACAACCCTCTCTCCTCTGCTGAGGATCCTCACAACAACAATCTTTCTTTAGATTGGGATGAACATACTCTTCAGAATTTGGATTGGGATTCCATCATGGGTGATTTGGGTTTACACGATGACTCCAATTCTGCTCTCAAGAACAATATCACTACCACCACCAACAATAATCATCTTCATCATCTTCCTCACTTCTCCGAATTTCTCCACTCTCAATCCTTCGATCAAACCGCTCACCTTCTTCCCCCTGATTTCTTCCTCTCTGAACCCTTTTCCAATAACTCCCCTTCCATGCTCCAAACCTTCAATTCCTTCAATTCCAACAACCCATCTCTTGATTTCCTCGAAGATATTGTTTCCGCTGCCGATTGCTTTGATTCCAATGATTTCCAACTCGCTCATGTGATATTGGAGCGGCTCAATCAACGCCTTCAATCCGATTCCTCTGCTAAGCCCCTTCACCGAGCTGCTTTCTTCATCAAAGAAGCTCTTCAATCTCTCCTCTCTCCCTCTCCAGACCGCTATAATCGCCTCTCTTCCTGGCCCGATATCGTCCATACTATCAAAGCCTACAAGGCCTTCTCTGCAATTTCTCCGATTCCCATGTTTTCTCACTTCACCACCAATCAGGCCCTTCTCGAAGCTCTCAACGCTTCCTCTTTCATTCATATTGTTGATTTTGATATCGGATTTGGAGGGCAGTACGCCTCTTTCATGAAGGAGATTGCTGATAAAGCAGAATCCAAGAACACCGTTCCACCGGTGCTTCGGATTACCGCCGTCGTGCCTGAAGAGTTTGCGATTGAGAGTAGGTTGATTAGGGAAAATCTCTGCCAGTTTGCTCAGGATCTGAAAATTCGATTTCATATCGATCTCGTGCCGCTTCGAACTTTCCAGACGCTGTCTTTCAAATCCGTGAAATTCATGGAAGGGGAGAAGGCGGCGATTCTGTTGACTCCGACTATCTTTCGCCGTCTAGGGAGTGTAAACATCATAGCCTCTTTTCTCGCCGATATTCGGCGGGTATCGCCGTGCGTTGTCGTGTTCGTTGACGGCGAAGGGTGGTCGGATTCTGGCGCGGCGTCATTTAAGAGGAATTTGGTGAAAAATTTGGAGTTTTACGCCACGATGCTAGAGTCGCTGGACGCGGCGGGTGTTAGCGGTGAGTGGGTGCGGAGGATTGAGACGTTCGTACTCCGACCAAAGATATTCGCGACGGTAGAAGGGGCAGGGGAAATGGCGGCGCCACCGTGGAGGGAGGTGTTCCAAGGAGCGGGGATGAGGCCGGTGGCGCTGAGCCAGTTTGCGGATTTTCAAGCGGAGTGCTTACTTGGGAAAGTACAGGTTCGTGGGTTCCAAGTAGGCAAACGATATGCTGAGCTGGTGCTGTGCTGGCATGAGAGACCTCTGGTCGCCACGTCGGCGTGGAGGTGTTAA 1602 50.06 MRVPVSNHQSSNNPIPKLHSSPSTIAFHTPTAAASTCYEPTSVLDLRRSPSPVAQHNPLSSAEDPHNNNLSLDWDEHTLQNLDWDSIMGDLGLHDDSNSALKNNITTTTNNNHLHHLPHFSEFLHSQSFDQTAHLLPPDFFLSEPFSNNSPSMLQTFNSFNSNNPSLDFLEDIVSAADCFDSNDFQLAHVILERLNQRLQSDSSAKPLHRAAFFIKEALQSLLSPSPDRYNRLSSWPDIVHTIKAYKAFSAISPIPMFSHFTTNQALLEALNASSFIHIVDFDIGFGGQYASFMKEIADKAESKNTVPPVLRITAVVPEEFAIESRLIRENLCQFAQDLKIRFHIDLVPLRTFQTLSFKSVKFMEGEKAAILLTPTIFRRLGSVNIIASFLADIRRVSPCVVVFVDGEGWSDSGAASFKRNLVKNLEFYATMLESLDAAGVSGEWVRRIETFVLRPKIFATVEGAGEMAAPPWREVFQGAGMRPVALSQFADFQAECLLGKVQVRGFQVGKRYAELVLCWHERPLVATSAWRC 533
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2336418 2338019 + Lsi07G002180.1 Lsi07g00218 666640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00218 533 MobiDBLite consensus disorder prediction 1 24 - -
Lsi07g00218 533 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 10 532 IPR005202 -
Lsi07g00218 533 PANTHER SCARECROW-LIKE PROTEIN 15 10 532 - -
Lsi07g00218 533 MobiDBLite consensus disorder prediction 53 72 - -
Lsi07g00218 533 Pfam GRAS domain family 171 532 IPR005202 -
Lsi07g00218 533 MobiDBLite consensus disorder prediction 48 72 - -
Lsi07g00218 533 ProSiteProfiles GRAS family profile. 160 532 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00218 Lsi-Chr7:2336418 Lsi07g01305 Lsi-Chr7:19027646 8.51E-69 dispersed
Lsi07g00218 Lsi-Chr7:2336418 Lsi07g00219 Lsi-Chr7:2357801 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25591 PF03514 GRAS 8.00E-85 CL0063 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00218 - - csv:116401665 892.878