Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00219 ATGAGAGTTCCTGTTTCCAATCATCAATCATCCTTACCCTCTTCTACTCCTAACCCAATTCCTAAACTCCACTCCTCCCCCTCTATCATCGCCTTCCATCCTCCCACCACCGCCGCTACAACCTGTTACGAACCCACCTCTGTCCTCGATCTCCGCCGCAGCCCTAGCCCCGTGGCGCACGACAACCCCCTCTCCTCTGCTGAGGATCGTCACAACAACAACACCACCACCAATCCTTCTTTAGATTGGGATGAACATACTCTTCAGAATTTGGATTGGGATTCCATCATGGGTGATTTGGGTTTACACGATGACTCCAATTCTGCTCTCAAGAACAATATCACTACCACCACCAACAATAATCATCTTCATCATCTTCCTCATTTCCCCGACTTTCTCCACTCCCAATCCTTGGATCAAACCGCCCATCTTCTTCCCCCTGATTTCTTCCTCTCTGAACCCTTTTCCAATCACTCCCCCTCCATGCTCCAAACCTTCAATTCCTACAATTCCAACAACCCATCTCTTGATTTCCTCGAAGATATTGTTTCCGCTGCCGATTGCTTTGATTCCAACGATTTCCAACTCGCTCATGTGATATTGGAGCGCCTCAATCAACGCCTTCAATCCGCCTCCTCTAATAACCCCCTTCACCGGGCCGCTTTCTTCTTCAAAGAAGCTCTTCAATCTCTCCTATCTCCCTCTCCCAACCCCCATAATCGCCTCTCTTCCTGGCCTGATATCGTCCATACTATTAAGGCCTACAAGGCTTTCTCTGTAATTTCTCCGATTCCCATGTTTTCTCACTTCACCACTAATCAGGCTCTTCTCGAAGCTCTCAATGCTTCCTCAATCATTCATATTATTGATTTTGATATCGGATTTGGAGGGCAGTATGCTTCTTTCATGAAGGAGATTGTCGATAAAGCAGAATCCAGGAATGTCGTTCCGCCGTTGCTTCGAATTACCGCCGTCGTGCCTGAGGAATTTGCGATTGAGAGTAGGTTGATTAGAGAGAATCTCTGCCAGTTCGCTCAGGATTTGAAAGTTCGATTTCATATAGATCTCGTGCCGCTTCGAACTTTTCAGACGTTGTCTTTCAAATCCATGAAATTCATGGAAGGGGAGAAGGCGGCGATTCTGTTAACTCCGACCATCTTTTCCCGTCTTGGGAGTATAAATAGCGTAGCCTCTTTTCTCGCCGACGTGCGGCGGGTGTCGCCGTGCGTAGTCGTGTTCGTCGACGGCGAAGGGTGGTCGGACTCTGGCGCAACGTCGTTCAAGAGGAATTTAATGGACAGTCTAGAGTTTTACGCACTGATGTTGGAGTCGTTGGACGCGGCTGGGGCCAGCCGTGAGTGGGTGCGGAGGATTGAAACGTTCGTGGTCCGGCCGAAGATATCGGCGGCGGTTGAAGGTGCGGGGAGAATGGCAGCGCCGCCGTGGAGGGAGGTGTTCCACGGGGCCGGGATGAAACCGGTGGCGCTGAGCCAGTTTGCGGATTTTCAAGCGGAGTGCTTACTTGGCAAAATACAGGTTCGAGGGTTCCAAATAGGCAAACGACATGCTGAGCTGGTGCTGTGCTGGCATGAGAGGCCTCTAGTCGCCACGTCGGCTTGGAGATGCTAA 1629 50.4 MRVPVSNHQSSLPSSTPNPIPKLHSSPSIIAFHPPTTAATTCYEPTSVLDLRRSPSPVAHDNPLSSAEDRHNNNTTTNPSLDWDEHTLQNLDWDSIMGDLGLHDDSNSALKNNITTTTNNNHLHHLPHFPDFLHSQSLDQTAHLLPPDFFLSEPFSNHSPSMLQTFNSYNSNNPSLDFLEDIVSAADCFDSNDFQLAHVILERLNQRLQSASSNNPLHRAAFFFKEALQSLLSPSPNPHNRLSSWPDIVHTIKAYKAFSVISPIPMFSHFTTNQALLEALNASSIIHIIDFDIGFGGQYASFMKEIVDKAESRNVVPPLLRITAVVPEEFAIESRLIRENLCQFAQDLKVRFHIDLVPLRTFQTLSFKSMKFMEGEKAAILLTPTIFSRLGSINSVASFLADVRRVSPCVVVFVDGEGWSDSGATSFKRNLMDSLEFYALMLESLDAAGASREWVRRIETFVVRPKISAAVEGAGRMAAPPWREVFHGAGMKPVALSQFADFQAECLLGKIQVRGFQIGKRHAELVLCWHERPLVATSAWRC 542
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2357801 2359429 + Lsi07G002190.1 Lsi07g00219 666641

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00219 542 MobiDBLite consensus disorder prediction 52 83 - -
Lsi07g00219 542 MobiDBLite consensus disorder prediction 68 83 - -
Lsi07g00219 542 MobiDBLite consensus disorder prediction 1 31 - -
Lsi07g00219 542 PANTHER SCARECROW-LIKE PROTEIN 15 33 541 - -
Lsi07g00219 542 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 33 541 IPR005202 -
Lsi07g00219 542 ProSiteProfiles GRAS family profile. 169 541 IPR005202 -
Lsi07g00219 542 MobiDBLite consensus disorder prediction 1 23 - -
Lsi07g00219 542 Pfam GRAS domain family 180 541 IPR005202 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00219 - - - csv:116401665 929.472
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00219 Lsi-Chr7:2357801 Lsi07g01305 Lsi-Chr7:19027646 1.87E-67 dispersed
Lsi07g00218 Lsi-Chr7:2336418 Lsi07g00219 Lsi-Chr7:2357801 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g884 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone10ag0587 Cone3ag0614 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi07g00219 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004174 0 0 1 0 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 2 1 1 1 1 44
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25592 PF03514 GRAS 2.10E-85 CL0063 Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi07g00219 Lsi_Chr07 FPKM 11.770379 12.694846 13.03268 12.841908 10.765564 10.651178 10.438289 11.85223 11.371122 11.233535