Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00222 ATGCAAAAGAAAGAAAGAAAAAAAAAAAAAAAAGAAACCCCACACCAAAAACATCAGATCAAAACAAGTTCTTCCTTGACAAAGATGGAAGCCAATTTGGAGGTGCTGAGGGAAAGCTTCAGAAATGGAAGAACAAGGAGTTTTGAATGGAGGAAAACCCAGCTGAGTTCGCTGATTCAATTCATCCATGAGAAAGAAAACGCCATTTTTGAAGCCCTCTATCAAGATCTTGGCAAGCATCCTGCGGAAAGTTTTCGAGATGAGGTTGGAATTGTTCTGAAATCTGCAAACAATGCTCTCTGCTCTTTACACAAATGGATGGCCCCTAAAAAGAAATCTGTGCCATTACTGTTCTTCCCAGCAAAAGGAGAAGTTTTGTCTGAGCCATTTGGTCTAGTCCTCATAATTTCATCTTGGAATTTCCCCCTTTCTTTAGCATTGGATCCGTTAATTGGAGCGATATCTGCAGGCAATACAGCGGTTATAAAACCGTCGGAATATGCTCCAGTTTTCTCCTCTTTTCTTTCTGCAACAATCCCTCTTTACCTTGACAATAAAGCCATCAAAGTTGTGGAGGGTGGAGCTGATGTTAGTGAACAACTTCTACAGTACAAGTGGGATAAGATCTTCTTCACTGGGAGCCCAAGAGTAGCTAGGATTGTGATGTCAGCAGCTGCAAAGCATCTAACTCCTGTTACTTTAGAGCTTGGGGGAAAATGTCCTGCAATCTTTGATTACTCCTCTGTCCATTCCAACATGAAGGTAGCAGCCAAGAGAATCGTTGGAGGAAAATGGGGGCCGTGCGCCGGGCAGGCATGCATAGGGATAGATTATGTGCTTGTGGAGGATAAGTTTGCTTCAGAATTGATCGAGTCATTAAAGCGAATACTCAAGAAGTTTTATGGTGAAAACTCGAAAAACTCAACGAGCATAGCCCGTATTGTTAATGAGAAAAATGTTGAAAGAATAAGCAATCTTCTCAAAGACCCTAAGGTTGCTGCTTCCATTGTCCATGGTGGCTCTATTGACAAAGAAAAACTCTTCATTGAGCCAACAATATTGTTGAATCCTCCAATCGACGCCGATATCATGACCGAAGAAATCTTCGGTCCCCTGCTACCGATAATCACATTGAACAAAATTGAAGAAAGCATTGAGTTCATCAATGCAAGACCGAAACCTCTCGCTCTCTATGCCTTCACGGGAGACGAAACTCTCAAGAAACGGATTTTATTCGAAACGTCATCGGGAAGTGTCACATTCAATGATAGCGTGGTTCAGTTTGTGTGTGATTCACTACCATTCGGCGGTGTTGGTCAGAGTGGTTTCGGGAGTTACCATGGCAAGTATTCATTTGATACGTTCAGCCATGAAAAAGCAGTAATGCAGAGAAGCTTTTTCATGGAAATCGAGTCACGATATCCACCATGGAACGATTTCAAGCTCAAGTTCTTTAGATTGGGGTATCGATTCGACTATTTCGGGCTGGTACTGCTCCTTTTGGGGTTGAAGTAG 1515 42.31 MQKKERKKKKKETPHQKHQIKTSSSLTKMEANLEVLRESFRNGRTRSFEWRKTQLSSLIQFIHEKENAIFEALYQDLGKHPAESFRDEVGIVLKSANNALCSLHKWMAPKKKSVPLLFFPAKGEVLSEPFGLVLIISSWNFPLSLALDPLIGAISAGNTAVIKPSEYAPVFSSFLSATIPLYLDNKAIKVVEGGADVSEQLLQYKWDKIFFTGSPRVARIVMSAAAKHLTPVTLELGGKCPAIFDYSSVHSNMKVAAKRIVGGKWGPCAGQACIGIDYVLVEDKFASELIESLKRILKKFYGENSKNSTSIARIVNEKNVERISNLLKDPKVAASIVHGGSIDKEKLFIEPTILLNPPIDADIMTEEIFGPLLPIITLNKIEESIEFINARPKPLALYAFTGDETLKKRILFETSSGSVTFNDSVVQFVCDSLPFGGVGQSGFGSYHGKYSFDTFSHEKAVMQRSFFMEIESRYPPWNDFKLKFFRLGYRFDYFGLVLLLLGLK 504
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2384536 2389098 - Lsi07G002220.1 Lsi07g00222 666644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00222 504 MobiDBLite consensus disorder prediction 1 24 - -
Lsi07g00222 504 PANTHER ALDEHYDE DEHYDROGENASE FAMILY 3 MEMBER F1 32 504 - -
Lsi07g00222 504 PIRSF ALDH 5 496 IPR012394 GO:0006081
Lsi07g00222 504 Pfam Aldehyde dehydrogenase family 7 461 IPR015590 GO:0016491
Lsi07g00222 504 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 238 441 IPR016163 GO:0016620
Lsi07g00222 504 SUPERFAMILY ALDH-like 30 476 IPR016161 GO:0016491
Lsi07g00222 504 MobiDBLite consensus disorder prediction 1 16 - -
Lsi07g00222 504 PANTHER ALDEHYDE DEHYDROGENASE 32 504 IPR012394 GO:0006081
Lsi07g00222 504 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 37 459 IPR016162 GO:0016491
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02400 Lsi-Chr4:31151398 Lsi07g00222 Lsi-Chr7:2384536 4.98E-163 dispersed
Lsi04g02401 Lsi-Chr4:31158328 Lsi07g00222 Lsi-Chr7:2384536 9.98E-133 dispersed
Lsi07g00222 Lsi-Chr7:2384536 Lsi10g01057 Lsi-Chr10:14796703 1.81E-153 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00222 K00128 - csv:101221321 871.692