Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00224 ATGGAATGTGTTGAATTAAGCCCCCAACTCTGTTTTCATGAAAATGCTTCTTTTAATCCCCAGAATGTTGTCTCTTCCGATGATGTTTTCGTCGACCAACTCCTCGATTTGTCTAATCATGATGAATTTCTTCAAGACCAAACTCCTGACCATGACGATAACCCCTCTGTTTCCCTTTCCATTTCTATTTCTGCTCAACAAATTCATCACAACTCCATTGTTTCCGATTTTCCTTCTTTACCCTCCACAGAACTTACCGTTCCGGCGGATGATTTGGCGGACCTCGAATGGCTGTCCCATTTCGTCGACGATTCTTTCTCTGGATTCTCCGCTCCGTTTCCCTCTCCTGGAATTTCTTCTCTGATGAAATCGTCCAAGGAACCCGCCGCCGTACAGGAACAACTGGAGAACCATGGTTCCGTTTCGCCGCCGCAACCCTGTTTCAAGACCCCCATTCCGGTCAAGCCTAGAAGCAAACGGATGAGAACCAGCGGTCGAGTTTGGTGCCTTGGTTCACCGTCGTTGACCGAGTCATCTTCCTGTTCCACAACGTCGTCCTCCTCGTCGTCGCCGGCGAGTCCTTGGCTCATCATATCCGACCGTTTCGAACCGGAAATTCCGGTCTCGAAGAAACCAAGAAGAAAGTCGCCGTCGGAAAAGTCCAGAACCACCATCGGAGCCCAGCCGCCTCGGCGGTGCAGCCATTGCGGAGTCCAGAAAACTCCCCAGTGGAGAACCGGTCCCCTCGGAGCAAAAACTCTCTGCAACGCTTGCGGCGTCCGGTTCAAATCGGGTCGACTTTTACCCGAATACCGACCCGCCTGCAGTCCGACTTTCTCCAGCGAATTGCACTCCAACCATCACCGGAAAGTCCTCGAAATGCGCCAAAAAAAGGAAGTAGCGCCCCTGGCCGAGTTTTTGACTGTAGAAGAAAATTAG 939 51.22 MECVELSPQLCFHENASFNPQNVVSSDDVFVDQLLDLSNHDEFLQDQTPDHDDNPSVSLSISISAQQIHHNSIVSDFPSLPSTELTVPADDLADLEWLSHFVDDSFSGFSAPFPSPGISSLMKSSKEPAAVQEQLENHGSVSPPQPCFKTPIPVKPRSKRMRTSGRVWCLGSPSLTESSSCSTTSSSSSSPASPWLIISDRFEPEIPVSKKPRRKSPSEKSRTTIGAQPPRRCSHCGVQKTPQWRTGPLGAKTLCNACGVRFKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRQKKEVAPLAEFLTVEEN 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2415732 2417126 - Lsi07G002240.1 Lsi07g00224 666646

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00224 312 MobiDBLite consensus disorder prediction 173 192 - -
Lsi07g00224 312 MobiDBLite consensus disorder prediction 206 220 - -
Lsi07g00224 312 ProSiteProfiles GATA-type zinc finger domain profile. 227 263 IPR000679 GO:0006355|GO:0043565
Lsi07g00224 312 PIRSF Txn_fac_GATA_plant 1 309 IPR016679 GO:0003677|GO:0005634|GO:0045893
Lsi07g00224 312 PANTHER GATA TRANSCRIPTION FACTOR 12 301 - -
Lsi07g00224 312 ProSitePatterns GATA-type zinc finger domain. 233 258 IPR000679 GO:0006355|GO:0043565
Lsi07g00224 312 MobiDBLite consensus disorder prediction 206 239 - -
Lsi07g00224 312 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 226 289 - -
Lsi07g00224 312 SMART GATA_3 227 281 IPR000679 GO:0006355|GO:0043565
Lsi07g00224 312 PANTHER GATA TRANSCRIPTION FACTOR 12 301 - -
Lsi07g00224 312 Pfam GATA zinc finger 233 267 IPR000679 GO:0006355|GO:0043565
Lsi07g00224 312 CDD ZnF_GATA 232 280 IPR000679 GO:0006355|GO:0043565
Lsi07g00224 312 Gene3D - 226 300 IPR013088 GO:0006355|GO:0008270
Lsi07g00224 312 MobiDBLite consensus disorder prediction 136 159 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00224 - - - bhj:120069179 503.827
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00626 Lsi-Chr1:5038133 Lsi07g00224 Lsi-Chr7:2415732 1.08E-68 dispersed
Lsi04g02328 Lsi-Chr4:30490393 Lsi07g00224 Lsi-Chr7:2415732 3.58E-49 dispersed
Lsi05g00024 Lsi-Chr5:361850 Lsi07g00224 Lsi-Chr7:2415732 1.76E-07 dispersed
Lsi07g00224 Lsi-Chr7:2415732 Lsi07g00519 Lsi-Chr7:5457234 5.21E-47 dispersed
Lsi10g00416 Lsi-Chr10:6313348 Lsi07g00224 Lsi-Chr7:2415732 9.27E-61 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi08g01074 CCT,ECH 101 351 C2C2-Gata Transcription Factor Family AT5G25830 57.0 2.8e-69 259.2
Lsi04g02328 CCT,ECH 39 352 C2C2-Gata Transcription Factor Family AT5G25830 50.9 6.3e-69 258.1
Lsi05g01573 . 2 147 C2C2-Gata Transcription Factor Family AT3G06740 60.4 8.4e-37 150.2
Lsi07g00224 . 21 299 C2C2-Gata Transcription Factor Family AT5G66320 50.5 6.7e-66 248.1
Lsi01g00626 . 105 281 C2C2-Gata Transcription Factor Family AT4G36240 50.8 1.2e-42 170.2
Lsi07g01258 . 72 580 C2C2-Gata Transcription Factor Family AT4G17570 52.2 1.9e-128 456.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008902 3 0 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 2 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25593 PF00320 GATA 3.90E-16 CL0167 Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi07g00224 Lsi_Chr07 FPKM 0.0 0.0 0.0 0.93427 3.683758 5.463088 2.482701 3.345915 4.279416 4.696342