Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00224 ATGGAATGTGTTGAATTAAGCCCCCAACTCTGTTTTCATGAAAATGCTTCTTTTAATCCCCAGAATGTTGTCTCTTCCGATGATGTTTTCGTCGACCAACTCCTCGATTTGTCTAATCATGATGAATTTCTTCAAGACCAAACTCCTGACCATGACGATAACCCCTCTGTTTCCCTTTCCATTTCTATTTCTGCTCAACAAATTCATCACAACTCCATTGTTTCCGATTTTCCTTCTTTACCCTCCACAGAACTTACCGTTCCGGCGGATGATTTGGCGGACCTCGAATGGCTGTCCCATTTCGTCGACGATTCTTTCTCTGGATTCTCCGCTCCGTTTCCCTCTCCTGGAATTTCTTCTCTGATGAAATCGTCCAAGGAACCCGCCGCCGTACAGGAACAACTGGAGAACCATGGTTCCGTTTCGCCGCCGCAACCCTGTTTCAAGACCCCCATTCCGGTCAAGCCTAGAAGCAAACGGATGAGAACCAGCGGTCGAGTTTGGTGCCTTGGTTCACCGTCGTTGACCGAGTCATCTTCCTGTTCCACAACGTCGTCCTCCTCGTCGTCGCCGGCGAGTCCTTGGCTCATCATATCCGACCGTTTCGAACCGGAAATTCCGGTCTCGAAGAAACCAAGAAGAAAGTCGCCGTCGGAAAAGTCCAGAACCACCATCGGAGCCCAGCCGCCTCGGCGGTGCAGCCATTGCGGAGTCCAGAAAACTCCCCAGTGGAGAACCGGTCCCCTCGGAGCAAAAACTCTCTGCAACGCTTGCGGCGTCCGGTTCAAATCGGGTCGACTTTTACCCGAATACCGACCCGCCTGCAGTCCGACTTTCTCCAGCGAATTGCACTCCAACCATCACCGGAAAGTCCTCGAAATGCGCCAAAAAAAGGAAGTAGCGCCCCTGGCCGAGTTTTTGACTGTAGAAGAAAATTAG 939 51.22 MECVELSPQLCFHENASFNPQNVVSSDDVFVDQLLDLSNHDEFLQDQTPDHDDNPSVSLSISISAQQIHHNSIVSDFPSLPSTELTVPADDLADLEWLSHFVDDSFSGFSAPFPSPGISSLMKSSKEPAAVQEQLENHGSVSPPQPCFKTPIPVKPRSKRMRTSGRVWCLGSPSLTESSSCSTTSSSSSSPASPWLIISDRFEPEIPVSKKPRRKSPSEKSRTTIGAQPPRRCSHCGVQKTPQWRTGPLGAKTLCNACGVRFKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRQKKEVAPLAEFLTVEEN 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2415732 2417126 - Lsi07G002240.1 Lsi07g00224 666646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00224 312 MobiDBLite consensus disorder prediction 173 192 - -
Lsi07g00224 312 MobiDBLite consensus disorder prediction 206 220 - -
Lsi07g00224 312 ProSiteProfiles GATA-type zinc finger domain profile. 227 263 IPR000679 GO:0006355|GO:0043565
Lsi07g00224 312 PIRSF Txn_fac_GATA_plant 1 309 IPR016679 GO:0003677|GO:0005634|GO:0045893
Lsi07g00224 312 PANTHER GATA TRANSCRIPTION FACTOR 12 301 - -
Lsi07g00224 312 ProSitePatterns GATA-type zinc finger domain. 233 258 IPR000679 GO:0006355|GO:0043565
Lsi07g00224 312 MobiDBLite consensus disorder prediction 206 239 - -
Lsi07g00224 312 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 226 289 - -
Lsi07g00224 312 SMART GATA_3 227 281 IPR000679 GO:0006355|GO:0043565
Lsi07g00224 312 PANTHER GATA TRANSCRIPTION FACTOR 12 301 - -
Lsi07g00224 312 Pfam GATA zinc finger 233 267 IPR000679 GO:0006355|GO:0043565
Lsi07g00224 312 CDD ZnF_GATA 232 280 IPR000679 GO:0006355|GO:0043565
Lsi07g00224 312 Gene3D - 226 300 IPR013088 GO:0006355|GO:0008270
Lsi07g00224 312 MobiDBLite consensus disorder prediction 136 159 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00626 Lsi-Chr1:5038133 Lsi07g00224 Lsi-Chr7:2415732 1.08E-68 dispersed
Lsi04g02328 Lsi-Chr4:30490393 Lsi07g00224 Lsi-Chr7:2415732 3.58E-49 dispersed
Lsi05g00024 Lsi-Chr5:361850 Lsi07g00224 Lsi-Chr7:2415732 1.76E-07 dispersed
Lsi07g00224 Lsi-Chr7:2415732 Lsi07g00519 Lsi-Chr7:5457234 5.21E-47 dispersed
Lsi10g00416 Lsi-Chr10:6313348 Lsi07g00224 Lsi-Chr7:2415732 9.27E-61 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25593 PF00320 GATA 3.90E-16 CL0167 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00224 - - bhj:120069179 503.827