Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00225 ATGACATTCCATTTTCCGTCAATGGATTTCGTTTTGAAAAACTTTCCAATTTCACCATTTCTATTCTTCATTGTGCCTCTAGTGCTCCTTCTTCTCACTTCTGTTTTCCGGCAGCGGCAGCGGCGGCGGCTGCCACTCCCTCCGGGGCCTAAAGGGCTACCCTTCATCGGCAATATGCTGATGATAGACCAACTCACCCACCGTGGACTCGCCGCCATGGCCAAACGGTATGGCGGAATCTTCCATCTCCGTATCGGCTTCCTCCATATGGTTGCCATTTCCGACCCTGACGCTGCCCGGCATGTTCTTCAGGTACAAGATCTAGTGTTCTCAAACCGTCCTGCAACCAAAGCTATAAAGTACTTAACATACGAGCGAGCCGACATGGCGTTCGCTCACTACGGCCCATTCTGGCGACAAATGCGAAAAGTGTGCGTCATGAAATTGTTCAGCCGCAAGCGAGCCGAGTCATGGGCATCTGTTCGACACGAGGTTCATAATCTCATCACTACAATCGCCAACAACACACAAACCCCTCTCAACCTCGGACACCTAGTTTTCACAATGACCATGAATATCATTTACAGAGCTGCCTTTGGGACAATCGAACCGCAAGACCAATCTCAATTCATCAAAATACTTGCAGAATTCTCCAAGCTTTTTGGAGCTTTTAATATCGCTGATTTTTTCCCCTTTCTTGGTTGGATTGATCCTCAAGGTCTCACTCCTAGACTTGTCGAGGCTCGTCAATCCCTCGACCGATTTATCGATAGAATTATTGATCAACATTTAGTGAAAAGGAAGAAAATGGAGGAAATTGATAAGGACATGGTTGATGAGTTACTAGCTTTCTATAGTGAAGATGGGGGAGCAAATAATGAAAGTGAGTTAGAGGATTTGCAATCGCAAAACGCTATTAAACTCACTAGAGACAATATCAAAGCCATCATAATGGACGTGATGTTTGGCGGCACAGAAACAGTGGCCTCCGCCATAGAATGGGCCATGGCGGAGCTCATGAAGAATCCCGACCACCTCAACAAACTTCAACAAGAACTCGCTGCCGCCGTCGGCCTTCACCGGCGTCCAGAAGAATCCGACTTAGAGAATCTAACATACCTGAAATGCACTCTCAAGGAAACTCTCCGGCTCCACCCACCGATCCCGCTCCTCCTCCACGAGACGGCCGCCGATACGGAACTCGCCGGCTACCGGATTCCTGCGAAGTCCCGCGTCTTCATCAACGCATGGGCGCTCGGGCGGGACGAGAAGTCGTGGGTGGACCCAAACAGTTTCCGGCCGGCGAGGTTCGAAAGCGACGGCGCCGCCGACTTTAAAGGCGGGAACTTTGAGTTCATTCCATTTGGGTTGGGTCGGCGATCTTGCCCTGGAATGCAGCTGGGGATTTACGCGGTGGAGATGGCGGTGGCGAATTTGGTACATTGTTTCCAGTGGGAGTTGCCGGAGGGGATGAAGCCGGCCGAGTTGGATATGAAGGACGTTTTTGGACTCACTGCGCCCAGAGCGAGTCGACTCGTCGCCGTTCCGTACAAGAGAGTTGTTTGTAGTTTGGACTGA 1578 50.57 MTFHFPSMDFVLKNFPISPFLFFIVPLVLLLLTSVFRQRQRRRLPLPPGPKGLPFIGNMLMIDQLTHRGLAAMAKRYGGIFHLRIGFLHMVAISDPDAARHVLQVQDLVFSNRPATKAIKYLTYERADMAFAHYGPFWRQMRKVCVMKLFSRKRAESWASVRHEVHNLITTIANNTQTPLNLGHLVFTMTMNIIYRAAFGTIEPQDQSQFIKILAEFSKLFGAFNIADFFPFLGWIDPQGLTPRLVEARQSLDRFIDRIIDQHLVKRKKMEEIDKDMVDELLAFYSEDGGANNESELEDLQSQNAIKLTRDNIKAIIMDVMFGGTETVASAIEWAMAELMKNPDHLNKLQQELAAAVGLHRRPEESDLENLTYLKCTLKETLRLHPPIPLLLHETAADTELAGYRIPAKSRVFINAWALGRDEKSWVDPNSFRPARFESDGAADFKGGNFEFIPFGLGRRSCPGMQLGIYAVEMAVANLVHCFQWELPEGMKPAELDMKDVFGLTAPRASRLVAVPYKRVVCSLD 525
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2443353 2448655 + Lsi07G002250.1 Lsi07g00225 666647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00225 525 Pfam Cytochrome P450 47 508 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi07g00225 525 PRINTS E-class P450 group I signature 74 93 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi07g00225 525 PRINTS E-class P450 group I signature 332 358 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi07g00225 525 PRINTS E-class P450 group I signature 415 439 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi07g00225 525 PRINTS E-class P450 group I signature 375 393 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi07g00225 525 PRINTS E-class P450 group I signature 462 485 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi07g00225 525 PRINTS E-class P450 group I signature 98 119 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi07g00225 525 PRINTS E-class P450 group I signature 312 329 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi07g00225 525 PRINTS E-class P450 group I signature 452 462 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi07g00225 525 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 455 464 IPR017972 GO:0005506|GO:0016705
Lsi07g00225 525 Gene3D Cytochrome P450 31 519 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi07g00225 525 PRINTS P450 superfamily signature 376 387 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi07g00225 525 PRINTS P450 superfamily signature 323 340 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi07g00225 525 PRINTS P450 superfamily signature 453 462 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi07g00225 525 PANTHER CYTOCHROME P450 FAMILY MONOOXYGENASE 8 524 - -
Lsi07g00225 525 PANTHER CYTOCHROME P450 84A1-RELATED 8 524 - -
Lsi07g00225 525 SUPERFAMILY Cytochrome P450 39 519 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00225 Lsi-Chr7:2443353 Lsi01g00721 Lsi-Chr1:5720652 5.30E-133 dispersed
Lsi11g01133 Lsi-Chr11:19797173 Lsi07g00225 Lsi-Chr7:2443353 0 transposed
Lsi01g00622 Lsi-Chr1:5002931 Lsi07g00225 Lsi-Chr7:2443353 7.81E-128 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00225 K09755 - vvi:100267863 710.679