Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi07g00229 | ATGGTTGTTCCTGTTATGAAGCTAATTCTGTTTCTGCTCATCACCATAATGCTGCCCGGCACCGCCCTTTCTTACGGCCAAAACTGGACGGTGGGCAGCGGCGGCCGGGGAATGAGAACAGTGGAAGATGAATACTTGAAATGGATAAGACATATGGGCTCTTTCAAGCACTCCCTTTTTCAAAAGACGAAGAATAAGTTCAAGCCTTGTTTGACACTGAAGGTTTCTAAGAACACCAAGGCGGGGGGTTTTCGCTCGCTTCAGAAGGCTATAAGCTCTCTGCCGGTGATCAACCGGTGCCGGGTCCTCATCCGTGTCGCTGCTGGAATCTATAGTACCATTACATTGCTCGTCCCCACCCCCTCCCTCCAAAAAAAGAACAAGGCAAGGCTTCCTCCGTCAGGAGCATTGGGAAAGCAAGCAGTGGCATTCAGAATATCAGGGGATGCGGCAACATTCATAAGTTGCAGGTTCATTGGCGCCCAGGATACATTATACGACCACATGGGGCGCCACTACTTTAAAGACTGCTACATCGAAGGGTCGGTGGACTTCGTGTTCGGTGACGGTCGCTCTATCTATGATGGTTGCCATTTGCATGCCATCACCAATAGTTACGGCGCACTCACAGCCCAGAAGAGGAATAGCCTGCTTGAGGAAACTGGCTTCTCATTCCTTAATTGTAAGGTTTCTGGCTCAGGCGCTCTGTATTTGGGTAGAGCATGGGGTAGCTTCTCCAGAGTTGTATTTGCTTATACCTTTATGGATAAAATCATCACTCCCACTGGTTGGTATAACTGGGGCGACAAAAATCGTGAATTGACTGTGTTTTATGGACAATATCGATGTTCAGGACCAGGAGCTGATTATGGAGGACGAGTTTCGTGGTCTAGAGAACTCACCGAGTCAGAAGCCAACCCATTTCTCTCTCTTGATTTTATTAATGCAAACCAATGGCTTCCAAATTATCACACTCATCTCGCCTTGAAACCAAATTGA | 999 | 47.75 | MVVPVMKLILFLLITIMLPGTALSYGQNWTVGSGGRGMRTVEDEYLKWIRHMGSFKHSLFQKTKNKFKPCLTLKVSKNTKAGGFRSLQKAISSLPVINRCRVLIRVAAGIYSTITLLVPTPSLQKKNKARLPPSGALGKQAVAFRISGDAATFISCRFIGAQDTLYDHMGRHYFKDCYIEGSVDFVFGDGRSIYDGCHLHAITNSYGALTAQKRNSLLEETGFSFLNCKVSGSGALYLGRAWGSFSRVVFAYTFMDKIITPTGWYNWGDKNRELTVFYGQYRCSGPGADYGGRVSWSRELTESEANPFLSLDFINANQWLPNYHTHLALKPN | 332 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 2501961 | 2506091 | - | Lsi07G002290.1 | Lsi07g00229 | 666651 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi07g00229 | 332 | Pfam | Pectinesterase | 135 | 316 | IPR000070 | GO:0030599|GO:0042545 | |
| Lsi07g00229 | 332 | ProSitePatterns | Pectinesterase signature 2. | 179 | 188 | IPR033131 | - | |
| Lsi07g00229 | 332 | SUPERFAMILY | Pectin lyase-like | 72 | 326 | IPR011050 | - | |
| Lsi07g00229 | 332 | Gene3D | - | 121 | 329 | IPR012334 | - | |
| Lsi07g00229 | 332 | PANTHER | ACYL-COA THIOESTER HYDROLASE YBHC-RELATED | 125 | 321 | - | - | |
| Lsi07g00229 | 332 | PANTHER | ACYL-COA THIOESTER HYDROLASE YBHC-RELATED | 39 | 113 | - | - | |
| Lsi07g00229 | 332 | PANTHER | PECTINESTERASE | 125 | 321 | - | - | |
| Lsi07g00229 | 332 | PANTHER | PECTINESTERASE | 39 | 113 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi02g02501 | Lsi-Chr2:31482061 | Lsi07g00229 | Lsi-Chr7:2501961 | 2.00E-71 | dispersed | |
| Lsi06g00224 | Lsi-Chr6:2582297 | Lsi07g00229 | Lsi-Chr7:2501961 | 1.02E-118 | dispersed | |
| Lsi07g00229 | Lsi-Chr7:2501961 | Lsi09g00424 | Lsi-Chr9:4495920 | 2.54E-76 | dispersed | |
| Lsi07g00229 | Lsi-Chr7:2501961 | Lsi03g01970 | Lsi-Chr3:31110745 | 6.53E-63 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi07g00229 | K01051 | - | csv:101222494 | 562.377 |