Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00230 ATGGCCGGTTTTTTCCCACTAGGCGGCGCCGGAAGCAGCGGAAGAGGTTCCAATTATCATTTTCCTACTACTACCACTACTATCACCACCACCACCGGCGGCGGCGGCGGCGAAATAATTCATCCGAGCGAAGGGTTATTTTGGTACAAGAATTATGAGAGATTGGAAACATGGGAGGAAGAACAGCATCAGCAGCAGCAGGCCGAACAAGGGGGAGAAGGGTTTGTTTACTCCGGCGATGAATCGCCGGCGAGATCGTCGTTGGTGATGGTGAGATCGGGGAGAGGCGGTGGCGGAGGGCATGTAACGAGCTGCCATGACTGTGGAAATCAAGCGAAAAAAGATTGCGTTCACATGCGATGTAGAACTTGTTGTAAAAGCCGTGGGTTTGAGTGTGAAACCCACGTTAAAAGCACTTGGGTTCCCGCCTCCAAACGCCGTGACCGCTACCTCCGTTGCGACGCCTCTAACCCCAAACGCCCTAAAGATAATCCCGCCGCGTCTTCAGGGTTCGAAATGGGGAATTTTCCGGTGGAAGTGAGCTCAACGGCGGTGTTTCGGTGCGTACGAATGACAGCGTTGGACGAAACCAAAGACCAATATGCGTATCAAACAGCTGTCAATATTGGAGGCCATATCTTCAAAGGCATTCTTTACGACCACGGCCCTGAACAACCACCCACCTCCGCCTCTCCCGACGCCGCCGCAATCCTCATCACCACCGCCGAATCCGCCGCATTGCTCGATCCTCCTCCGTCTTACCCGACTCCTCTCACCACCTATATCGCCGCCGGTACGCAATTTTTTATTCCCCCATCTTAG 822 53.77 MAGFFPLGGAGSSGRGSNYHFPTTTTTITTTTGGGGGEIIHPSEGLFWYKNYERLETWEEEQHQQQQAEQGGEGFVYSGDESPARSSLVMVRSGRGGGGGHVTSCHDCGNQAKKDCVHMRCRTCCKSRGFECETHVKSTWVPASKRRDRYLRCDASNPKRPKDNPAASSGFEMGNFPVEVSSTAVFRCVRMTALDETKDQYAYQTAVNIGGHIFKGILYDHGPEQPPTSASPDAAAILITTAESAALLDPPPSYPTPLTTYIAAGTQFFIPPS 273
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2538914 2540598 + Lsi07G002300.1 Lsi07g00230 666652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00230 273 PANTHER PROTEIN SHORT INTERNODES 1 270 - -
Lsi07g00230 273 MobiDBLite consensus disorder prediction 61 81 - -
Lsi07g00230 273 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 176 223 IPR006511 -
Lsi07g00230 273 Pfam Domain of unknown function (DUF702) 103 224 - -
Lsi07g00230 273 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 104 146 IPR006510 -
Lsi07g00230 273 MobiDBLite consensus disorder prediction 1 38 - -
Lsi07g00230 273 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 270 IPR007818 GO:0003700|GO:0006355
Lsi07g00230 273 MobiDBLite consensus disorder prediction 16 36 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi01g00631 Lsi07g00230 CCT
Lsi01g00631 Lsi07g00230 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g00576 Lsi-Chr6:7568095 Lsi07g00230 Lsi-Chr7:2538914 3.09E-38 dispersed
Lsi07g00230 Lsi-Chr7:2538914 Lsi08g01351 Lsi-Chr8:21804740 3.10E-51 dispersed
Lsi01g00631 Lsi-Chr1:5081554 Lsi07g00230 Lsi-Chr7:2538914 2.44E-68 wgd
Lsi04g01713 Lsi-Chr4:24486446 Lsi07g00230 Lsi-Chr7:2538914 8.22E-59 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25595 PF05142 DUF702 3.70E-50 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00230 - - bhj:120073083 420.624