Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00230 ATGGCCGGTTTTTTCCCACTAGGCGGCGCCGGAAGCAGCGGAAGAGGTTCCAATTATCATTTTCCTACTACTACCACTACTATCACCACCACCACCGGCGGCGGCGGCGGCGAAATAATTCATCCGAGCGAAGGGTTATTTTGGTACAAGAATTATGAGAGATTGGAAACATGGGAGGAAGAACAGCATCAGCAGCAGCAGGCCGAACAAGGGGGAGAAGGGTTTGTTTACTCCGGCGATGAATCGCCGGCGAGATCGTCGTTGGTGATGGTGAGATCGGGGAGAGGCGGTGGCGGAGGGCATGTAACGAGCTGCCATGACTGTGGAAATCAAGCGAAAAAAGATTGCGTTCACATGCGATGTAGAACTTGTTGTAAAAGCCGTGGGTTTGAGTGTGAAACCCACGTTAAAAGCACTTGGGTTCCCGCCTCCAAACGCCGTGACCGCTACCTCCGTTGCGACGCCTCTAACCCCAAACGCCCTAAAGATAATCCCGCCGCGTCTTCAGGGTTCGAAATGGGGAATTTTCCGGTGGAAGTGAGCTCAACGGCGGTGTTTCGGTGCGTACGAATGACAGCGTTGGACGAAACCAAAGACCAATATGCGTATCAAACAGCTGTCAATATTGGAGGCCATATCTTCAAAGGCATTCTTTACGACCACGGCCCTGAACAACCACCCACCTCCGCCTCTCCCGACGCCGCCGCAATCCTCATCACCACCGCCGAATCCGCCGCATTGCTCGATCCTCCTCCGTCTTACCCGACTCCTCTCACCACCTATATCGCCGCCGGTACGCAATTTTTTATTCCCCCATCTTAG 822 53.77 MAGFFPLGGAGSSGRGSNYHFPTTTTTITTTTGGGGGEIIHPSEGLFWYKNYERLETWEEEQHQQQQAEQGGEGFVYSGDESPARSSLVMVRSGRGGGGGHVTSCHDCGNQAKKDCVHMRCRTCCKSRGFECETHVKSTWVPASKRRDRYLRCDASNPKRPKDNPAASSGFEMGNFPVEVSSTAVFRCVRMTALDETKDQYAYQTAVNIGGHIFKGILYDHGPEQPPTSASPDAAAILITTAESAALLDPPPSYPTPLTTYIAAGTQFFIPPS 273
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2538914 2540598 + Lsi07G002300.1 Lsi07g00230 666652

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00230 273 PANTHER PROTEIN SHORT INTERNODES 1 270 - -
Lsi07g00230 273 MobiDBLite consensus disorder prediction 61 81 - -
Lsi07g00230 273 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 176 223 IPR006511 -
Lsi07g00230 273 Pfam Domain of unknown function (DUF702) 103 224 - -
Lsi07g00230 273 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 104 146 IPR006510 -
Lsi07g00230 273 MobiDBLite consensus disorder prediction 1 38 - -
Lsi07g00230 273 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 270 IPR007818 GO:0003700|GO:0006355
Lsi07g00230 273 MobiDBLite consensus disorder prediction 16 36 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00230 - - - bhj:120073083 420.624
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi01g00631 Lsi07g00230 CCT
Lsi01g00631 Lsi07g00230 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g00576 Lsi-Chr6:7568095 Lsi07g00230 Lsi-Chr7:2538914 3.09E-38 dispersed
Lsi07g00230 Lsi-Chr7:2538914 Lsi08g01351 Lsi-Chr8:21804740 3.10E-51 dispersed
Lsi01g00631 Lsi-Chr1:5081554 Lsi07g00230 Lsi-Chr7:2538914 2.44E-68 wgd
Lsi04g01713 Lsi-Chr4:24486446 Lsi07g00230 Lsi-Chr7:2538914 8.22E-59 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1063 Blo04g00900 . . Bda10g00166 . . Bma09g00096 Bma15g00973 . Cmo16g00699 Cma03g00708 Cma07g00452 Car03g00648 Car07g00399 Sed14g1169 Cpe19g00837 . Bhi03g00899 Tan03g2042 Cmetu04g2849 . Hepe04g1564 . . Cla01g01952 Cam01g2041 Cec04g1699 Cco04g1764 Clacu01g2063 Cmu01g1940 Cre04g1614 Cone8ag0832 Cone12ag0735 Cone6ag1659 Cone9ag1584 Lsi01g00631 . Chy07g01266 Cme08g00899 Blo05g00815 Blo06g00331 . . Bpe10g00138 Bpe06g00032 Bma03g00977 . . Cmo03g00734 Cmo07g00450 Cma16g00640 . . . . Cpe14g00546 . . . . . . . Cla07g00839 Cam07g0908 Cec07g0963 Cco07g0951 Clacu07g0884 Cmu07g0883 Cre07g1245 Lsi07g00230 Csa06g03294 Chy02g00602 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi03g02235 . 17 747 C2H2 Transcription Factor Family AT5G01310 59.0 2.4e-238 822.0
Lsi01g01928 . 33 359 C2H2 Transcription Factor Family AT3G57670 65.7 3.5e-111 398.7
Lsi03g01705 . 153 358 C2H2 Transcription Factor Family AT3G57670 82.0 1.5e-101 366.7
Lsi02g02581 . 122 294 C2H2 Transcription Factor Family AT3G57670 83.8 3.9e-94 342.0
Lsi09g01027 . 84 248 C2H2 Transcription Factor Family AT3G57670 78.8 1.9e-85 313.2
Lsi03g00110 . 146 300 C2H2 Transcription Factor Family AT3G57670 82.6 2.1e-84 309.7
Lsi10g01052 . 188 348 C2H2 Transcription Factor Family AT3G57670 75.0 1.6e-76 283.5
Lsi03g00110 . 17 312 C2H2 Transcription Factor Family AT1G08290 53.5 1.5e-89 326.6
Lsi09g01027 . 92 257 C2H2 Transcription Factor Family AT1G08290 75.3 3.0e-82 302.4
Lsi02g02581 . 46 288 C2H2 Transcription Factor Family AT1G08290 56.4 5.6e-81 298.1
Lsi01g01928 . 181 353 C2H2 Transcription Factor Family AT1G08290 69.5 1.2e-78 290.4
Lsi03g01705 . 159 313 C2H2 Transcription Factor Family AT1G08290 75.6 7.6e-78 287.7
Lsi10g01052 . 192 342 C2H2 Transcription Factor Family AT1G08290 61.5 4.2e-60 228.8
Lsi01g01928 . 123 356 C2H2 Transcription Factor Family AT3G20880 66.5 4.6e-93 338.6
Lsi03g01705 . 160 311 C2H2 Transcription Factor Family AT3G20880 88.2 4.7e-90 328.6
Lsi03g00110 . 101 309 C2H2 Transcription Factor Family AT3G20880 62.3 2.6e-88 322.8
Lsi02g02581 . 125 296 C2H2 Transcription Factor Family AT3G20880 79.2 4.9e-87 318.5
Lsi09g01027 . 91 245 C2H2 Transcription Factor Family AT3G20880 83.2 7.8e-85 311.2
Lsi10g01052 . 187 348 C2H2 Transcription Factor Family AT3G20880 64.3 7.4e-67 251.5
Lsi01g01928 . 87 356 C2H2 Transcription Factor Family AT1G51220 63.0 5.2e-95 344.7
Lsi03g01705 . 155 311 C2H2 Transcription Factor Family AT1G51220 88.6 1.6e-91 333.2
Lsi02g02581 . 125 288 C2H2 Transcription Factor Family AT1G51220 82.3 8.1e-88 320.9
Lsi03g00110 . 108 320 C2H2 Transcription Factor Family AT1G51220 62.2 2.0e-86 316.2
Lsi09g01027 . 91 245 C2H2 Transcription Factor Family AT1G51220 81.9 1.4e-84 310.1
Lsi10g01052 . 188 348 C2H2 Transcription Factor Family AT1G51220 66.3 6.0e-67 251.5
Lsi09g01027 . 25 248 C2H2 Transcription Factor Family AT1G13290 69.3 4.4e-93 338.2
Lsi01g01928 . 123 349 C2H2 Transcription Factor Family AT1G13290 64.8 3.2e-83 305.4
Lsi03g01705 . 157 316 C2H2 Transcription Factor Family AT1G13290 80.9 7.8e-82 300.8
Lsi03g00110 . 108 301 C2H2 Transcription Factor Family AT1G13290 68.4 8.6e-81 297.4
Lsi02g02581 . 70 277 C2H2 Transcription Factor Family AT1G13290 61.5 3.6e-79 292.0
Lsi10g01052 . 190 333 C2H2 Transcription Factor Family AT1G13290 67.7 3.8e-60 228.8
Lsi07g00123 . 7 584 C2H2 Transcription Factor Family AT5G51230 51.2 1.2e-172 603.6
Lsi04g02186 . 1 340 C2H2 Transcription Factor Family AT2G24500 54.4 4.8e-100 361.7
Lsi09g00719 . 13 389 C2H2 Transcription Factor Family AT1G25250 55.8 5.8e-90 328.2
Lsi02g00257 . 27 207 C2H2 Transcription Factor Family AT1G25250 80.2 2.7e-87 319.3
Lsi02g00015 . 37 430 C2H2 Transcription Factor Family AT1G25250 55.6 8.7e-86 314.3
Lsi06g00122 . 42 239 C2H2 Transcription Factor Family AT1G25250 57.1 7.9e-63 238.0
Lsi08g01410 . 1 186 C2H2 Transcription Factor Family AT1G25250 57.7 1.9e-61 233.4
Lsi01g01357 CCT,ECH 7 198 C2H2 Transcription Factor Family AT1G25250 56.2 1.3e-60 230.7
Lsi01g00694 . 11 196 C2H2 Transcription Factor Family AT1G25250 56.1 8.2e-60 228.0
Lsi02g02256 . 49 202 C2H2 Transcription Factor Family AT1G25250 64.3 1.2e-58 224.2
Lsi03g02034 CCT,ECH 41 192 C2H2 Transcription Factor Family AT1G25250 63.6 2.6e-58 223.0
Lsi10g00083 . 18 182 C2H2 Transcription Factor Family AT1G25250 59.9 2.6e-58 223.0
Lsi07g00216 . 32 185 C2H2 Transcription Factor Family AT1G25250 64.3 5.8e-58 221.9
Lsi07g00577 . 59 210 C2H2 Transcription Factor Family AT1G25250 64.3 4.9e-57 218.8
Lsi02g02372 . 70 220 C2H2 Transcription Factor Family AT1G25250 64.3 9.3e-56 214.5
Lsi11g00037 . 78 231 C2H2 Transcription Factor Family AT1G25250 58.6 1.6e-55 213.8
Lsi02g02929 . 3 147 C2H2 Transcription Factor Family AT1G25250 63.9 1.8e-54 210.3
Lsi02g01428 . 1 170 C2H2 Transcription Factor Family AT1G25250 53.8 6.3e-52 201.8
Lsi02g01427 . 1 170 C2H2 Transcription Factor Family AT1G25250 53.8 6.3e-52 201.8
Lsi04g01423 . 59 159 C2H2 Transcription Factor Family AT1G25250 66.0 9.7e-37 151.4
Lsi02g01562 . 65 280 C2H2 Transcription Factor Family AT3G27970 64.0 1.7e-83 306.6
Lsi02g01561 . 3 221 C2H2 Transcription Factor Family AT3G27970 55.9 3.9e-72 268.9
Lsi03g02235 . 17 747 C2H2 Transcription Factor Family AT5G01310 59.0 2.4e-238 822.0
Lsi11g01280 CCT 60 284 C2H2 Transcription Factor Family AT4G35280 52.6 2.1e-60 229.6
Lsi02g00257 . 74 186 C2H2 Transcription Factor Family AT1G68130 88.5 5.1e-58 221.9
Lsi08g01410 . 79 186 C2H2 Transcription Factor Family AT1G68130 68.2 5.6e-41 165.2
Lsi06g00122 . 88 196 C2H2 Transcription Factor Family AT1G68130 62.7 1.2e-38 157.5
Lsi03g02034 CCT,ECH 84 192 C2H2 Transcription Factor Family AT1G68130 61.8 1.5e-38 157.1
Lsi01g01357 CCT,ECH 90 198 C2H2 Transcription Factor Family AT1G68130 62.7 2.6e-38 156.4
Lsi07g00577 . 102 210 C2H2 Transcription Factor Family AT1G68130 62.7 4.5e-38 155.6
Lsi02g02256 . 95 202 C2H2 Transcription Factor Family AT1G68130 62.7 7.6e-38 154.8
Lsi01g00694 . 73 180 C2H2 Transcription Factor Family AT1G68130 63.6 7.6e-38 154.8
Lsi11g00037 . 114 231 C2H2 Transcription Factor Family AT1G68130 56.7 2.2e-37 153.3
Lsi10g00083 . 75 182 C2H2 Transcription Factor Family AT1G68130 63.6 2.2e-37 153.3
Lsi07g00216 . 78 185 C2H2 Transcription Factor Family AT1G68130 63.6 3.8e-37 152.5
Lsi02g01428 . 29 151 C2H2 Transcription Factor Family AT1G68130 57.6 4.9e-37 152.1
Lsi02g01427 . 29 151 C2H2 Transcription Factor Family AT1G68130 57.6 4.9e-37 152.1
Lsi09g00719 . 36 389 C2H2 Transcription Factor Family AT2G01940 53.5 1.1e-87 320.9
Lsi02g00015 . 37 430 C2H2 Transcription Factor Family AT2G01940 52.9 1.5e-86 317.0
Lsi02g00257 . 31 206 C2H2 Transcription Factor Family AT2G01940 79.8 4.4e-81 298.9
Lsi06g00122 . 45 198 C2H2 Transcription Factor Family AT2G01940 64.7 8.8e-58 221.5
Lsi08g01410 . 40 188 C2H2 Transcription Factor Family AT2G01940 67.1 1.2e-57 221.1
Lsi03g02034 CCT,ECH 45 194 C2H2 Transcription Factor Family AT2G01940 64.5 4.4e-57 219.2
Lsi02g02256 . 56 204 C2H2 Transcription Factor Family AT2G01940 65.8 1.3e-56 217.6
Lsi01g01357 CCT,ECH 51 200 C2H2 Transcription Factor Family AT2G01940 65.1 2.2e-56 216.9
Lsi02g02372 . 77 222 C2H2 Transcription Factor Family AT2G01940 65.8 2.4e-55 213.4
Lsi07g00577 . 63 212 C2H2 Transcription Factor Family AT2G01940 62.5 7.0e-55 211.8
Lsi10g00083 . 36 184 C2H2 Transcription Factor Family AT2G01940 64.5 7.0e-55 211.8
Lsi01g00694 . 34 182 C2H2 Transcription Factor Family AT2G01940 63.8 9.1e-55 211.5
Lsi07g00216 . 39 187 C2H2 Transcription Factor Family AT2G01940 64.5 1.6e-54 210.7
Lsi11g00037 . 78 233 C2H2 Transcription Factor Family AT2G01940 60.4 2.9e-53 206.5
Lsi02g02929 . 3 149 C2H2 Transcription Factor Family AT2G01940 62.4 2.9e-53 206.5
Lsi02g01428 . 1 138 C2H2 Transcription Factor Family AT2G01940 61.0 2.2e-48 190.3
Lsi02g01427 . 1 138 C2H2 Transcription Factor Family AT2G01940 61.0 2.2e-48 190.3
Lsi03g00398 . 1 245 C2H2 Transcription Factor Family AT5G14140 65.9 2.1e-91 332.4
Lsi02g02519 . 1 792 C2H2 Transcription Factor Family AT3G62240 50.2 9.9e-217 750.4
Lsi01g00043 . 1 397 C2H2 Transcription Factor Family AT1G30970 54.6 2.8e-100 362.5
Lsi04g00708 . 8 371 C2H2 Transcription Factor Family AT4G06634 59.5 3.0e-62 236.1
Lsi03g00014 . 798 971 C2H2 Transcription Factor Family AT1G66500 51.4 1.2e-40 164.5
Lsi09g00971 . 49 486 C2H2 Transcription Factor Family AT5G64610 82.4 5.8e-211 730.3
Lsi09g00971 . 49 486 C2H2 Transcription Factor Family AT5G09740 65.8 2.1e-153 538.9
Lsi09g00681 . 1 385 C2H2 Transcription Factor Family AT2G01650 54.1 2.7e-111 399.1
Lsi04g01739 . 1 415 C2H2 Transcription Factor Family AT1G75710 59.2 1.6e-134 476.5
Lsi10g01422 . 54 373 C2H2 Transcription Factor Family AT2G29660 59.5 1.9e-101 366.3
Lsi05g00669 . 1 409 C2H2 Transcription Factor Family AT4G27240 62.7 9.5e-134 473.8
Lsi04g01251 . 1 412 C2H2 Transcription Factor Family AT4G27240 58.3 1.5e-123 439.9
Lsi09g01047 . 190 393 C2H2 Transcription Factor Family AT4G27240 51.9 1.2e-51 201.1
Lsi05g00669 . 1 438 C2H2 Transcription Factor Family AT5G54630 67.2 9.4e-159 557.0
Lsi04g01251 . 1 441 C2H2 Transcription Factor Family AT5G54630 63.3 3.3e-148 521.9
Lsi06g01495 . 53 1596 C2H2 Transcription Factor Family AT3G47890 57.4 0.0e+00 1598.9
Lsi06g01495 . 1 1596 C2H2 Transcription Factor Family AT3G47910 56.7 0.0e+00 1649.0
Lsi07g01340 . 1 240 C2H2 Transcription Factor Family AT4G12240 70.3 2.1e-97 352.8
Lsi04g01533 . 48 415 C2H2 Transcription Factor Family AT5G52010 66.1 4.4e-133 471.5
Lsi06g00701 . 1 98 C2H2 Transcription Factor Family AT3G02790 79.6 3.4e-40 161.0
Lsi01g01854 . 1 246 C2H2 Transcription Factor Family AT3G57480 60.7 5.6e-86 314.3
Lsi01g01854 . 1 248 C2H2 Transcription Factor Family AT2G41835 67.1 2.4e-93 339.0
Lsi05g00484 . 74 308 C2H2 Transcription Factor Family AT5G63280 50.6 5.7e-68 254.6
Lsi06g01616 . 465 593 C2H2 Transcription Factor Family AT5G63280 65.1 2.0e-52 203.0
Lsi08g00385 . 87 398 C2H2 Transcription Factor Family AT1G01350 74.4 7.1e-132 467.2
Lsi09g00756 . 14 184 C2H2 Transcription Factor Family AT5G61190 76.6 1.1e-74 278.9
Lsi06g00026 . 63 326 C2H2 Transcription Factor Family AT5G26610 63.8 3.6e-79 292.0
Lsi05g01974 . 24 549 C2H2 Transcription Factor Family AT1G01930 51.3 1.0e-138 490.7
Lsi08g00274 . 46 359 C2H2 Transcription Factor Family AT1G43860 58.6 1.6e-104 376.3
Lsi02g01904 . 81 292 C2H2 Transcription Factor Family AT1G50670 69.8 1.2e-81 299.7
Lsi03g00037 . 1 394 C2H2 Transcription Factor Family AT1G55460 68.4 3.8e-156 548.1
Lsi07g01472 . 1 394 C2H2 Transcription Factor Family AT1G55460 68.0 1.2e-154 543.1
Lsi11g00619 . 4 146 C2H2 Transcription Factor Family AT3G05760 77.9 1.8e-58 222.2
Lsi03g01985 . 1 248 C2H2 Transcription Factor Family AT2G32600 78.6 1.4e-106 382.9
Lsi05g00093 . 1 508 C2H2 Transcription Factor Family AT5G06160 74.1 2.8e-217 751.5
Lsi06g01418 . 3 589 C2H2 Transcription Factor Family AT1G74250 50.3 5.5e-130 461.8
Lsi01g01300 . 3 117 C2H2 Transcription Factor Family AT2G36930 76.7 9.7e-49 190.3
Lsi09g01131 . 117 437 C2H2 Transcription Factor Family AT1G04850 72.8 7.7e-104 374.0
Lsi04g02186 . 1 336 C2H2 Transcription Factor Family AT4G31420 63.8 2.3e-105 379.4
Lsi03g02034 CCT,ECH 62 210 C2H2 Transcription Factor Family AT2G02080 80.5 7.3e-73 271.6
Lsi01g00694 . 51 190 C2H2 Transcription Factor Family AT2G02080 81.4 3.6e-72 269.2
Lsi02g02256 . 73 211 C2H2 Transcription Factor Family AT2G02080 83.5 6.2e-72 268.5
Lsi10g00083 . 53 191 C2H2 Transcription Factor Family AT2G02080 84.2 8.1e-72 268.1
Lsi01g01357 CCT,ECH 68 217 C2H2 Transcription Factor Family AT2G02080 79.2 2.4e-71 266.5
Lsi02g01428 . 7 145 C2H2 Transcription Factor Family AT2G02080 82.0 9.0e-71 264.6
Lsi02g01427 . 7 145 C2H2 Transcription Factor Family AT2G02080 82.0 9.0e-71 264.6
Lsi02g02929 . 17 157 C2H2 Transcription Factor Family AT2G02080 83.7 9.0e-71 264.6
Lsi07g00577 . 80 219 C2H2 Transcription Factor Family AT2G02080 82.1 2.6e-70 263.1
Lsi07g00216 . 56 193 C2H2 Transcription Factor Family AT2G02080 81.2 7.6e-70 261.5
Lsi06g00122 . 66 202 C2H2 Transcription Factor Family AT2G02080 83.2 1.9e-68 256.9
Lsi02g00015 . 56 187 C2H2 Transcription Factor Family AT2G02080 59.8 6.3e-48 188.7
Lsi09g00719 . 57 190 C2H2 Transcription Factor Family AT2G02080 58.2 1.5e-46 184.1
Lsi02g00257 . 52 184 C2H2 Transcription Factor Family AT2G02080 57.9 1.0e-45 181.4
Lsi04g00033 . 23 257 C2H2 Transcription Factor Family AT3G07940 62.6 1.7e-75 279.6
Lsi09g00817 . 96 328 C2H2 Transcription Factor Family AT3G07940 60.5 3.0e-69 258.8
Lsi02g00943 CCT 1 332 C2H2 Transcription Factor Family AT4G05330 66.9 2.6e-131 465.3
Lsi01g00082 CCT 25 329 C2H2 Transcription Factor Family AT4G05330 70.2 8.5e-130 460.3
Lsi02g00943 CCT 1 332 C2H2 Transcription Factor Family AT4G21160 68.0 3.4e-134 474.9
Lsi01g00082 CCT 25 329 C2H2 Transcription Factor Family AT4G21160 73.1 5.7e-134 474.2
Lsi08g00273 . 1 912 C2H2 Transcription Factor Family AT1G43850 55.6 2.4e-208 722.6
Lsi08g00515 . 1 906 C2H2 Transcription Factor Family AT1G43850 57.4 3.1e-200 695.7
Lsi05g01257 CCT,ECH 276 558 C2H2 Transcription Factor Family AT1G43850 58.7 9.7e-93 338.6
Lsi09g00593 CCT,ECH 275 556 C2H2 Transcription Factor Family AT1G43850 57.8 1.6e-90 331.3
Lsi01g01229 . 1 172 C2H2 Transcription Factor Family AT3G52800 59.0 1.3e-46 183.0
Lsi10g01159 . 1 167 C2H2 Transcription Factor Family AT3G52800 56.1 9.6e-45 176.8
Lsi05g00484 . 55 212 C2H2 Transcription Factor Family AT5G40710 57.5 2.0e-56 216.1
Lsi06g01616 . 465 593 C2H2 Transcription Factor Family AT5G40710 66.7 5.4e-54 208.0
Lsi09g00665 . 116 243 C2H2 Transcription Factor Family AT1G70790 59.2 5.6e-41 164.1
Lsi05g00329 . 38 165 C2H2 Transcription Factor Family AT1G70790 58.5 1.8e-39 159.1
Lsi04g01126 . 40 167 C2H2 Transcription Factor Family AT1G70790 56.2 2.0e-38 155.6
Lsi07g00408 . 44 197 C2H2 Transcription Factor Family AT5G10970 56.3 2.4e-37 152.9
Lsi05g01521 . 11 412 C2H2 Transcription Factor Family AT5G18550 60.1 1.5e-60 230.7
Lsi01g02067 . 1 602 C2H2 Transcription Factor Family AT5G39550 62.5 1.6e-222 769.2
Lsi11g00044 . 23 467 C2H2 Transcription Factor Family AT5G39550 52.9 5.7e-140 495.0
Lsi02g01562 . 65 280 C2H2 Transcription Factor Family AT5G40310 64.0 3.0e-85 312.4
Lsi02g01561 . 16 221 C2H2 Transcription Factor Family AT5G40310 54.9 1.4e-69 260.4
Lsi02g01944 . 246 528 C2H2 Transcription Factor Family AT1G34370 71.0 6.0e-116 414.1
Lsi01g00775 . 134 333 C2H2 Transcription Factor Family AT1G34370 55.6 2.4e-64 242.7
Lsi03g00054 . 197 362 C2H2 Transcription Factor Family AT1G34370 61.4 8.0e-60 227.6
Lsi06g01320 . 43 1209 C2H2 Transcription Factor Family AT3G18290 66.3 0.0e+00 1563.9
Lsi04g00238 . 41 1197 C2H2 Transcription Factor Family AT3G18290 60.2 0.0e+00 1387.5
Lsi02g01032 . 7 625 C2H2 Transcription Factor Family AT5G22480 58.6 7.4e-191 663.7
Lsi04g01972 . 1 338 C2H2 Transcription Factor Family AT3G14740 54.4 5.1e-106 381.3
Lsi07g00122 . 36 215 C2H2 Transcription Factor Family AT5G07500 55.1 4.9e-58 221.5
Lsi07g00121 . 36 215 C2H2 Transcription Factor Family AT5G07500 55.1 4.9e-58 221.5
Lsi04g00984 . 191 337 C2H2 Transcription Factor Family AT5G07500 55.1 4.6e-48 188.3
Lsi03g01206 . 239 359 C2H2 Transcription Factor Family AT5G07500 62.8 3.9e-47 185.3
Lsi03g01696 . 234 354 C2H2 Transcription Factor Family AT5G07500 62.0 1.5e-46 183.3
Lsi10g01438 . 213 333 C2H2 Transcription Factor Family AT5G07500 62.8 2.5e-46 182.6
Lsi11g00204 . 80 201 C2H2 Transcription Factor Family AT5G07500 63.9 9.5e-46 180.6
Lsi11g01705 . 57 163 C2H2 Transcription Factor Family AT5G07500 69.2 1.2e-45 180.3
Lsi06g00248 . 90 196 C2H2 Transcription Factor Family AT5G07500 68.2 3.6e-45 178.7
Lsi04g01443 CCT,ECH 72 178 C2H2 Transcription Factor Family AT5G07500 67.3 4.0e-44 175.3
Lsi08g01560 CCT,ECH 56 172 C2H2 Transcription Factor Family AT5G07500 61.0 3.4e-43 172.2
Lsi03g01206 . 1 721 C2H2 Transcription Factor Family AT5G12850 50.8 2.3e-185 646.0
Lsi03g01696 . 23 716 C2H2 Transcription Factor Family AT5G12850 51.3 1.9e-184 642.9
Lsi06g00248 . 84 211 C2H2 Transcription Factor Family AT5G12850 64.1 1.3e-50 198.4
Lsi11g00204 . 95 216 C2H2 Transcription Factor Family AT5G12850 64.8 4.5e-48 189.9
Lsi11g01705 . 57 190 C2H2 Transcription Factor Family AT5G12850 61.2 5.9e-48 189.5
Lsi08g01560 CCT,ECH 56 211 C2H2 Transcription Factor Family AT5G12850 53.6 1.5e-46 184.9
Lsi07g00122 . 37 147 C2H2 Transcription Factor Family AT5G12850 64.9 6.1e-45 179.5
Lsi07g00121 . 37 147 C2H2 Transcription Factor Family AT5G12850 64.9 6.1e-45 179.5
Lsi03g01428 . 3 192 C2H2 Transcription Factor Family AT3G28210 58.4 6.5e-63 237.3
Lsi06g00437 . 48 711 C2H2 Transcription Factor Family AT2G27100 58.3 1.9e-195 679.5
Lsi01g00631 CCT,ECH 82 326 C2H2 Transcription Factor Family AT5G66350 54.5 1.1e-62 237.3
Lsi07g00230 CCT,ECH 87 225 C2H2 Transcription Factor Family AT5G66350 54.3 9.1e-44 174.5
Lsi01g00631 CCT,ECH 111 260 C2H2 Transcription Factor Family AT2G21400 52.7 5.6e-38 154.5
Lsi04g01713 CCT,ECH 102 236 C2H2 Transcription Factor Family AT2G21400 54.0 2.1e-37 152.5
Lsi01g00631 CCT,ECH 112 263 C2H2 Transcription Factor Family AT2G18120 51.3 3.5e-39 158.7
Lsi04g01713 CCT,ECH 97 245 C2H2 Transcription Factor Family AT2G18120 50.3 1.9e-37 152.9
Lsi01g00631 CCT,ECH 95 335 C2H2 Transcription Factor Family AT1G75520 50.4 6.9e-58 221.5
Lsi08g01351 CCT,ECH 1 335 C2H2 Transcription Factor Family AT1G19790 51.3 5.1e-53 205.3
Lsi01g00631 CCT,ECH 110 335 C2H2 Transcription Factor Family AT3G51060 60.8 3.6e-65 245.7
Lsi01g00631 CCT,ECH 112 266 C2H2 Transcription Factor Family AT4G36260 52.1 3.5e-40 162.5
Lsi07g00230 CCT,ECH 104 224 C2H2 Transcription Factor Family AT4G36260 53.2 1.6e-37 153.7
Lsi04g01713 CCT,ECH 97 240 C2H2 Transcription Factor Family AT4G36260 50.3 2.1e-37 153.3
Lsi01g01928 . 168 338 C2H2 Transcription Factor Family AT1G34790 75.6 1.6e-82 303.1
Lsi03g01705 . 153 313 C2H2 Transcription Factor Family AT1G34790 77.6 3.0e-81 298.9
Lsi03g00110 . 112 302 C2H2 Transcription Factor Family AT1G34790 66.8 1.1e-80 297.0
Lsi09g01027 . 87 252 C2H2 Transcription Factor Family AT1G34790 74.7 1.6e-79 293.1
Lsi02g02581 . 119 294 C2H2 Transcription Factor Family AT1G34790 72.7 4.7e-79 291.6
Lsi10g01052 . 193 349 C2H2 Transcription Factor Family AT1G34790 62.2 5.4e-59 224.9
Lsi07g01266 . 223 421 C2H2 Transcription Factor Family AT4G16845 58.7 8.3e-57 218.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001605 2 3 3 3 2 2 4 2 2 2 2 2 4 2 2 3 2 2 4 2 2 2 2 2 2 2 2 3 2 2 71
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25595 PF05142 DUF702 3.70E-50 No_clan Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi07g00230 Lsi_Chr07 FPKM 450.343933 463.85202 423.709503 393.075958 84.966026 87.058556 74.443031 190.05011 205.571747 194.083862