Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00231 ATGCCGCCGAAGACGGGAAGCAACCCTCCTATTCTGGTGGATTTAACAAGCAGCGACGATGAGGAAGCTGCAGCAAACACAATGTCAAACAAAATAGCGATGAATTCTCAGACGAGACTCCAAGAGCAACGAGGCAGTTCTACGCCGATTTTATCATCATCAGACGATAAAGCTCTTGATTGCCGCAGTTTTTGGAAAGCCGGAAATTTCGATTTCGGCATTACTGCAAGCCCTCTTCCTGTTGATGGAGAGTTGGAGCATGCCCGAGTTCATCCGAAGTTTCTTCATTCCAATGCCACTTCTCACAAATGGGCGTTCGGTGCAATTGCTGAGCTTCTGGATAATGCTGTGGACGAGATACACAATGGGGCAACGTTTGTGAAGGTTGATAAAGTTAATATAATGAAGGATAATTCTCCAGCTTTACTTTTCCACGATGATGGTGGGGGAATGGATCCTGCTGGCATTCGGAAATATGGGAATGGATTTAAAACAAGCACCATGCGACTTGGAGCCGATGCAATTGTTTTCACTCGTGCGATTCATGGAGGCACTGCAACTCAGAGTGTTGGCCTTTTATCCTACACCTTTCTACGGATGACCAGCCAGGATGATGTTATTGTTCCAATGGTTGACTTCGATATTTCAGGACATTGGGCAGAACCAATAATTTATGGCTCTCAAGACGATTGGTCTTCTAATTTGAAAACTATCCTTGAATGGTCTCCTTTTTCATCAAAGGAGGACCTCCTGATACAGTTTGAGGATATTGGACGTCATGGAACAAAAGTTATCGTATTCAATCTCTGGTTGAATGATGAAGGCATTTATGAATTGAATTTTGATGATGATGATGAGGATATACGGTTGAGGGATGAAACTAATCAAGGAGGTTTGAGAAAACTGCGTAAAAGCGTTGCTGAATTGCAATCACATATTTCTTATCGAATTCGCTATTCGTTAAGGGCATATATTTCAATATTATATCTGAAAAGATTTACAAACTTCAACATCATCCTGAGGGGAAAACCAGTTGAGCAGCATAGTATTGCAGATGACTTGAAGTACTCAAAAGTAGTTACATATAAGCCTCAACTACACGTAGTAGTAAAAGAGCCCTTCTGGAAAGTTACTGGTGATGGCAGTTCAAAAGGGCTTGGTGTTGTGGGAGTGCTTGAAGCAAACTTCTTAGAGCCAGTGCATGACAAACAGGGATTTGAGAGATCATCTGTGTTTATCCGGCTTGAAACTAGACTGAAGCAAATGGTAATGGAGTATTGGAAATCCTGCTGTCACTTAGTGGGATATAAGCCTCCAGGTTTATATTATCTGCAGAAGGCTAACCAAGCTTCTACTGCACCTGCAGCTAACATTCAGAATAAATTGCCTAAGGAACAATATGATGGTCCTCCCAAAGGTTCCAACAAAGAACTGAACACTATCCAGGATTTTGATGTCCCTGGAAAGTCATATGTTGATCGTATCTGTGAAGAGAATATTGAACTATTTATGAGGTCCAAGCAATCTGGAAGAAGTCTGCAGCTAATGAACCAGATGATTGGTTTTAGTTACTTGAATATCACTAATGCGTAG 1593 41.62 MPPKTGSNPPILVDLTSSDDEEAAANTMSNKIAMNSQTRLQEQRGSSTPILSSSDDKALDCRSFWKAGNFDFGITASPLPVDGELEHARVHPKFLHSNATSHKWAFGAIAELLDNAVDEIHNGATFVKVDKVNIMKDNSPALLFHDDGGGMDPAGIRKYGNGFKTSTMRLGADAIVFTRAIHGGTATQSVGLLSYTFLRMTSQDDVIVPMVDFDISGHWAEPIIYGSQDDWSSNLKTILEWSPFSSKEDLLIQFEDIGRHGTKVIVFNLWLNDEGIYELNFDDDDEDIRLRDETNQGGLRKLRKSVAELQSHISYRIRYSLRAYISILYLKRFTNFNIILRGKPVEQHSIADDLKYSKVVTYKPQLHVVVKEPFWKVTGDGSSKGLGVVGVLEANFLEPVHDKQGFERSSVFIRLETRLKQMVMEYWKSCCHLVGYKPPGLYYLQKANQASTAPAANIQNKLPKEQYDGPPKGSNKELNTIQDFDVPGKSYVDRICEENIELFMRSKQSGRSLQLMNQMIGFSYLNITNA 530
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2562997 2574337 - Lsi07G002310.1 Lsi07g00231 666653

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00231 530 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 83 166 IPR036890 -
Lsi07g00231 530 Gene3D - 103 274 IPR036890 -
Lsi07g00231 530 MobiDBLite consensus disorder prediction 29 54 - -
Lsi07g00231 530 MobiDBLite consensus disorder prediction 29 55 - -
Lsi07g00231 530 Pfam Morc6 ribosomal protein S5 domain 2-like 319 367 IPR041006 -
Lsi07g00231 530 Pfam Morc6 ribosomal protein S5 domain 2-like 372 427 IPR041006 -
Lsi07g00231 530 PANTHER PROTEIN MICRORCHIDIA 1-RELATED 10 512 - -
Lsi07g00231 530 PANTHER ZINC FINGER CW-TYPE COILED-COIL DOMAIN PROTEIN 3. 10 512 IPR045261 GO:0016887
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00231 - - - csv:101216336 877.47
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01563 Lsi-Chr6:26044394 Lsi07g00231 Lsi-Chr7:2562997 7.06E-16 dispersed
Lsi07g00007 Lsi-Chr7:116157 Lsi07g00231 Lsi-Chr7:2562997 8.89E-42 dispersed
Lsi07g00008 Lsi-Chr7:118353 Lsi07g00231 Lsi-Chr7:2562997 3.51E-55 dispersed
Lsi07g00231 Lsi-Chr7:2562997 Lsi06g01658 Lsi-Chr6:26839428 1.58E-40 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1061 Blo04g00901 . . . . . . . . Cmo16g00697 . . . . . . . . . . . . . . . . . . . . . . Cone12ag0785 . . . . Chy07g01265 . . . . . . . . . . . . . . . . . . . . . . . . . Cla07g00838 Cam07g0907 Cec07g0960 Cco07g0950 Clacu07g0882 Cmu07g0882 Cre07g1243 Lsi07g00231 Csa04g00537 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011668 1 3 1 0 0 1 1 1 1 1 1 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi07g00231 Lsi_Chr07 FPKM 0.0 0.0 0.385482 0.202696 8.205462 10.389863 10.249988 2.200544 2.222803 2.276982