Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00234 ATGATCACGACGACGATGAGGAAGAAATCTGCCAGTTTTCTCTTCAGATACTCTCGATTTTTTCACTCGGATCAGCCTTTGAATCTTAATCATAAGAATTCGCTTCTCCGTTCAGGAACTTCCTTGTGCGCGCCAATTTCAAAATATTTTGGTTCCATTCCGGGATGCAGAAAAGCTTTTCAGGCTTCTGCGATCAATTATTTGAGAATGCCTTCCGGATTTCAGTTCAGACGCTTTACTTCATTATCTTCGGGGGTTCAGAGAAATCCTTCATTTTCGAGGTTAAATTCTGATGATATCGACTTTTTCCGGAGTATTTTGGGGGAGAAAAATGTAGTTCAGGATGAGGATAGGCTTTTGGATGCAAATACAGATTGGTTGCGGAAGTACAGAGGGTCGAGTAAGCTTTTACTACAACCTAGGAGCACAGAAGAGGTCTCTCAGATACTTAAATATTGCAACTCCAGAGACTTGCCTGTTGTACCCCAAGGTGGAAATACTGGTCTTGTTGGCGGAAGTGTTCCAGTTTTTGATGAAGTAATAATCAACCTTGGATTAATGAATGATATCGTATCTTTTGACAAGGTTAGCGGCATACTTGTTTGTGAAGCCGGTGGCATCTTAGAAAACTTGTCCTCTTTTCTTGACAACCAAGGATTTATAATGCCACTGGACTTAGGTGCTAAAGGAAGCTGCCAGATTGGTGGAAATGTTTCTACTAATGCAGGTGGTTTGCGCCTTGTTCGTTATGGATCTCTTCATGGCAGTGTACTTGGACTTGAAGTTGTTTTAGCAGATGGTAGTGTGCTCGACATGCTGGGAACTTTAAGAAAAGATAATACTGGATATGATTTAAAGCATTTGTTTATAGGCAGTGAAGGTACCTTGGGCATTATAACCAAGATTTCAATTCTTACCCCACCTAAACTACCTGCTACTAATGTAGCATTTCTTGGATGTAAAGATTACTCAAGCTGCCAGATTCTCAATCATTTAGAAGGTATTCGGAATCCATTGCCTCCGACAATGCACAACTTTTATGTTCTGATCGAGACGACAGGCACTGATGAATCATATGACAAGGAAAAGCTTGAATCATTTCTACTACGTTCGATGGAAGGTGGTTTAATCTCTGATGGTGTTCTTGCACAAGACATCAACCAAATATCCTCTTTTTGGCAGATCCGTGAGGGCATTCCAGAGGCATTGATGAAAGCAGGAGCTGTTTACAAGTATGATTTGTCGTTACCTGTTGAGAAGATGTACGATCTTGTTGAAGCAATGCGAACAAGACTTGGCAACTCCGGTAAAGTAATTGGTTACGGCCACCTTGGAGATGGTAATTTGCATCTGAATATTTCAACTCCTCAATATGATGATGCGGTTTTAGCACAAATTGAACCCTTTGTCTATGAGTGGACTTCTAACCATCGTGGAAGCATCAGTGCAGAGCATGGCTTGGGATTGATGAAAGCCAACAAGATTTTTTACAGCAAGTCACCTGAAATTGTTCGTATTTTAGAAACTTCATGA 1533 40.83 MITTTMRKKSASFLFRYSRFFHSDQPLNLNHKNSLLRSGTSLCAPISKYFGSIPGCRKAFQASAINYLRMPSGFQFRRFTSLSSGVQRNPSFSRLNSDDIDFFRSILGEKNVVQDEDRLLDANTDWLRKYRGSSKLLLQPRSTEEVSQILKYCNSRDLPVVPQGGNTGLVGGSVPVFDEVIINLGLMNDIVSFDKVSGILVCEAGGILENLSSFLDNQGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGSVLGLEVVLADGSVLDMLGTLRKDNTGYDLKHLFIGSEGTLGIITKISILTPPKLPATNVAFLGCKDYSSCQILNHLEGIRNPLPPTMHNFYVLIETTGTDESYDKEKLESFLLRSMEGGLISDGVLAQDINQISSFWQIREGIPEALMKAGAVYKYDLSLPVEKMYDLVEAMRTRLGNSGKVIGYGHLGDGNLHLNISTPQYDDAVLAQIEPFVYEWTSNHRGSISAEHGLGLMKANKIFYSKSPEIVRILETS 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2592923 2603338 + Lsi07G002340.1 Lsi07g00234 666656

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00234 510 Gene3D - 407 485 - -
Lsi07g00234 510 ProSiteProfiles PCMH-type FAD-binding domain profile. 130 309 IPR016166 GO:0071949
Lsi07g00234 510 Gene3D - 85 185 IPR016167 -
Lsi07g00234 510 Pfam FAD linked oxidases, C-terminal domain 339 506 IPR004113 GO:0003824|GO:0050660
Lsi07g00234 510 SUPERFAMILY FAD-binding/transporter-associated domain-like 98 308 IPR036318 GO:0050660
Lsi07g00234 510 SUPERFAMILY FAD-linked oxidases, C-terminal domain 283 495 IPR016164 GO:0003824|GO:0050660
Lsi07g00234 510 Pfam FAD binding domain 136 271 IPR006094 GO:0050660
Lsi07g00234 510 Gene3D - 316 405 - -
Lsi07g00234 510 PANTHER D-2-HYDROXYGLUTARATE DEHYDROGENASE, MITOCHONDRIAL 82 506 - -
Lsi07g00234 510 Gene3D - 189 309 IPR016169 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00234 K18204 D2HGDH; D-2-hydroxyglutarate dehydrogenase [EC:1.1.99.39] - csv:101216583 929.087
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01780 Lsi-Chr3:29215902 Lsi07g00234 Lsi-Chr7:2592923 1.50E-24 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1051 . . . . . Bpe13g00429 . . . Cmo16g00694 . . . . . . . . . . . . . . . . . . . . . . Cone12ag0783 . . . . Chy07g01262 . . . Bda11g01848 . . . . Bma06g00108 . . . Cma16g00636 . . . . Cpe14g00543 . . . . . . . Cla07g00835 Cam07g0904 Cec07g0957 Cco07g0947 Clacu07g0879 Cmu07g0879 Cre07g1240 Lsi07g00234 Csa04g00541 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009582 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi07g00234 Lsi_Chr07 FPKM 4.314239 6.323192 0.454441 0.353636 0.739093 0.904223 0.924123 0.0 0.0 0.0