Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00238 ATGGGGAACAGCAACTTAGCTTCTTTCATGGTTGGTTTTATGACATTTTATGCTTTGTTTTCAATGTTAGCCTACGAATTACCCATATTGGCCAAAGCTGATGACCAAAATCCAAAGGTTCACATAGTTTACTTGGGAGAAAAGCCATACCATGATACTAAATTCACAACTGATTCTCACCATCAATTATTAGCTACTATATTGGGAAGCACAGAAATGCCGAGGGTGGTCCGAGTATTTCCAAGTTCGATTTACAAAATGCATACTACAAGAAGTTGGGATTTTTTGGGGCTGTCTTCTTCTCCATCTGAGTCCTCAAACCTTCTTCATGGTGCTAAAATGGGTGACAATGTCATTATAGGTGTCATTGATACAGGAATCTGGCCGGAGTCAGAGTCTTTCAATGACAAAGGAGTAGGGCCAATACCATCACGATGGAAAGGCAGATGTGAATCAGGAGAACAATTCAAGTCCACAAACTGCAACAGAAAAATCATCGGAGCACGTTGGTACATGAAGGCCTTAATTGCCCAGTACGGTCGAGAGGTGCTAGCCAACGAATACTTATCACCACGAGATGCCAATGGACATGGAACGCACACAGCCAGCACAGCTGCAGGCTCATTTGTAACAAACGTTAGCTACCACGGAAATGCTGCTGGCACGGTGAGAGGCGGTGCACCACTAGCACGGTTGGCGATATACAAGGCGTTATGGACGAAGGAAGGGGGAGGGATGACGGCGGACATATTGATGGCCATAGATGAGGCCATTCATGATGGTGTGGATGTGTTGTCAATTTCGCTTGGGGGGTCGACTCCTTTCTATTCAGAGTCCTACAACGAAAACGAAATTGCATTTATGTCATTTCATGCTATAGCAAGGGGGATTTCTGTGGTGTGTTCGGGTGGGAATGAAGGGCCTTTTGAGCAGACGGTGGGAAACACTGCGCCTTGGATTTTGACTGTGGCTGCCAGCACTATTGATAGAGCCTTTCTTGCTTCTATTATTACACTTGGTGATAATACCACTTATTTGGGCCAAAGCTTCTTGAATTCCAAAAAGGACCTTGTTTTCGAGTTGGACATTTCTTCCGAACAAAGATGTGATAAGCTTTTGGGAAATGAAACTTCAATAAGTGGGAAGGTGGTACTGTGCTTCTCTGATTTAGCTGATTCGAAGACTATAGTACATGCGGGGACAGCAGTGTTCAATGCAAATGGAACCGGAATTATTGTCGCCGGCCAACAAAATGAAGACTTGATTGCTTGTATATATGTCTTAACAATTCCATGCATCCTTGTGGATACCGACGTTGGCACAAAATTATTTTTCTACGCCTTGCATAATAGTAATAACCCAGTGGTAAGGTTGAGGCCAGCAAAAACCATCATCGGCAAGCCCATAACATCCACCATAGCCTATTTCTCATCTAGAGGCCCTAATTCTGCTTCCCCCGCAATTCTCAAGCCAGACATAGCTGCTCCGGGATCTAACATTCTAGCTGCCGTTTCACCCCACAACGATCTCTATGAGAGCTTTGCCATCATGTCAGGAACTTCCATGGCTACGCCTCATATCTCTGGTATCGTCGCTCTTCTTAAATCCTTGCGCCCTACTTGGTCACCTGCCGCCATTAAATCAGCTCTCATGACTACTGCACGTACAGAGGACCCTTCAGGACTGCCCCTGTTTGCCAATGGAGCTCCTCCGAAAGTGGCGGACCCATTTGACTACGGCGGCGGAGTGGTGAACCCAAACGCCGCCGTGGACCCAGGTCTCATCTATGATATGGGAATCGAACATTACATATATTATTACATCTGCGGCATGGGTTATAAGGACTCCGACATTTCTCACCTAACGCACCAAAAAATAGAGTGTCCATTGCAGAGGCGGTCGGTGTTGGACTTGAATTTGCCGACCATTACAATACCTTCACTTACAAACTCAACCACTGTGACTCGGACTGTGACCAATGTTGGGAACTTGAGCTCTGTTTATAAGGTAATGATTGATCCTCCACTTGGGTGCAAGGTTAGTGTGAAGCCTCAAGTGTTGGCTTTTAACTCCAAAGTGAAGAAGATTTCGTTTAAGGTTACGTTTTCCACTACAGTTGAAAGGAATTATGGCTACTCTTTTGGAAAATTGACATGGAGTGATGGAGTGCATCTTGTTAAAACTCCTTTGTCTGTGGGATTTGATTTCCTTTGA 2214 44.99 MGNSNLASFMVGFMTFYALFSMLAYELPILAKADDQNPKVHIVYLGEKPYHDTKFTTDSHHQLLATILGSTEMPRVVRVFPSSIYKMHTTRSWDFLGLSSSPSESSNLLHGAKMGDNVIIGVIDTGIWPESESFNDKGVGPIPSRWKGRCESGEQFKSTNCNRKIIGARWYMKALIAQYGREVLANEYLSPRDANGHGTHTASTAAGSFVTNVSYHGNAAGTVRGGAPLARLAIYKALWTKEGGGMTADILMAIDEAIHDGVDVLSISLGGSTPFYSESYNENEIAFMSFHAIARGISVVCSGGNEGPFEQTVGNTAPWILTVAASTIDRAFLASIITLGDNTTYLGQSFLNSKKDLVFELDISSEQRCDKLLGNETSISGKVVLCFSDLADSKTIVHAGTAVFNANGTGIIVAGQQNEDLIACIYVLTIPCILVDTDVGTKLFFYALHNSNNPVVRLRPAKTIIGKPITSTIAYFSSRGPNSASPAILKPDIAAPGSNILAAVSPHNDLYESFAIMSGTSMATPHISGIVALLKSLRPTWSPAAIKSALMTTARTEDPSGLPLFANGAPPKVADPFDYGGGVVNPNAAVDPGLIYDMGIEHYIYYYICGMGYKDSDISHLTHQKIECPLQRRSVLDLNLPTITIPSLTNSTTVTRTVTNVGNLSSVYKVMIDPPLGCKVSVKPQVLAFNSKVKKISFKVTFSTTVERNYGYSFGKLTWSDGVHLVKTPLSVGFDFL 737
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2631138 2638714 - Lsi07G002380.1 Lsi07g00238 666660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00238 737 SUPERFAMILY Subtilisin-like 87 594 IPR036852 GO:0004252|GO:0006508
Lsi07g00238 737 ProSiteProfiles Serine proteases, subtilase domain profile. 92 590 - -
Lsi07g00238 737 PANTHER PEPTIDASE S8 22 72 - -
Lsi07g00238 737 Pfam Subtilase family 115 557 IPR000209 GO:0006508|GO:0008236
Lsi07g00238 737 PANTHER SUBTILISIN-LIKE PROTEASE SBT3.1-RELATED 22 72 - -
Lsi07g00238 737 CDD PA_subtilisin_like 337 458 - -
Lsi07g00238 737 PRINTS Subtilisin serine protease family (S8) signature 115 134 IPR015500 -
Lsi07g00238 737 PRINTS Subtilisin serine protease family (S8) signature 518 534 IPR015500 -
Lsi07g00238 737 PRINTS Subtilisin serine protease family (S8) signature 193 206 IPR015500 -
Lsi07g00238 737 Gene3D Peptidase S8/S53 domain 117 603 IPR036852 GO:0004252|GO:0006508
Lsi07g00238 737 Gene3D - 608 734 - -
Lsi07g00238 737 Pfam Fibronectin type-III domain 637 732 IPR041469 -
Lsi07g00238 737 ProSitePatterns Serine proteases, subtilase family, serine active site. 519 529 IPR023828 -
Lsi07g00238 737 PANTHER SUBTILISIN-LIKE PROTEASE SBT3.1-RELATED 72 732 - -
Lsi07g00238 737 PANTHER PEPTIDASE S8 72 732 - -
Lsi07g00238 737 CDD Peptidases_S8_3 85 554 IPR034197 -
Lsi07g00238 737 Gene3D - 329 465 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00103 Lsi-Chr3:1440093 Lsi07g00238 Lsi-Chr7:2631138 1.09E-68 dispersed
Lsi07g00238 Lsi-Chr7:2631138 Lsi07g01431 Lsi-Chr7:20842733 1.88E-155 dispersed
Lsi07g00238 Lsi-Chr7:2631138 Lsi02g02892 Lsi-Chr2:35145004 2.17E-155 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00238 - - csv:101219903 1053.12