Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00244 ATGGCTACGTTCGTGGAGCCACCGAACGGAATCAGATCAATGGGGAAGCATTATTTCACAATGTGGCAAACTCTGTTTGAAATTGATACTAAATATGTCCCAATCAAGCCAATTGGGCGAGGAGCTTATGGTGTGGTGTGTTCTTCGATCAACCGAGAGACCAACGAGAAGGTGGCGATCAAGAAGATTCACAATGTGTTTGAGAATCGCACGGACGCCATGAGAACATTGAGGGAGCTGATGCTTCTGAGGCATATAAGGCATGAGAATGTGATTGCTTTGAAGGATGTGATGATGCCAATCCATAGAAAAAGCTTTAAGGATGTTTATTTGGTTTATGAACTTATGGATACGGATCTTCATCAGATTATCAAATCCTCTCAGCCACTTTCCAATGATCATTGCAAGTACTTTATCTATCAGTTGCTTTGCGGGTTGCAGTATCTTCATTCGGCAAACATTCTTCACCGGGACTTGAAGCCCGGGAACCTCCTTGTCAATGCTAACTGCGATCTGAAGATATGCGATTTCGGGTTGGCACGAACTAGCATGGGCTGTGACCAGTTCATGACTGAGTATGTTGTTACTCGCTGGTACCGCGCTCCAGAGCTTCTCCTCTGTTGTGACAACTATGGGACTTCCATTGATGTATGGTCTGTGGGATGCATCTTTGCTGAGATTCTGGGTCGGCAACCTATCTTCCCGGGGACGGAGTGCCTCAACCAACTCAACTTAATCATCAACATTCTCGGTAGTCCAAAGGAAACAGATGTCGAGTTCATTGCCAATGGAAAGGCCAGAAATTATATCAAGGCATTGCCGTTCTCTAGAGGAATACGCCTTTCGCATCTATATCCACATGCTGAACCTTTGGCTTTAGACTTGTTACAGAAGATGCTTGTGTTTGATCCAACTAAGAGAATTACCGTTGACGAAGCACTTCAACATCCATACATGTCGGGGCTATACGACCCAAAATTCAACTCTCCTGTTGAGGTTCCCCTGGTTCTTGACATTGATGACTCACTTGAGGAGGCTAAGATCAGGGAAATGATGTTGAATGAGATGCTGTATTACCATCCTGAAGCTGTTTCATCATATTCTTGA 1107 44.53 MATFVEPPNGIRSMGKHYFTMWQTLFEIDTKYVPIKPIGRGAYGVVCSSINRETNEKVAIKKIHNVFENRTDAMRTLRELMLLRHIRHENVIALKDVMMPIHRKSFKDVYLVYELMDTDLHQIIKSSQPLSNDHCKYFIYQLLCGLQYLHSANILHRDLKPGNLLVNANCDLKICDFGLARTSMGCDQFMTEYVVTRWYRAPELLLCCDNYGTSIDVWSVGCIFAEILGRQPIFPGTECLNQLNLIINILGSPKETDVEFIANGKARNYIKALPFSRGIRLSHLYPHAEPLALDLLQKMLVFDPTKRITVDEALQHPYMSGLYDPKFNSPVEVPLVLDIDDSLEEAKIREMMLNEMLYYHPEAVSSYS 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2663814 2666739 - Lsi07G002440.1 Lsi07g00244 666666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00244 368 ProSitePatterns MAP kinase signature. 67 170 IPR003527 GO:0004707|GO:0005524|GO:0006468
Lsi07g00244 368 ProSitePatterns Serine/Threonine protein kinases active-site signature. 154 166 IPR008271 GO:0004672|GO:0006468
Lsi07g00244 368 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 11 364 - -
Lsi07g00244 368 SMART serkin_6 32 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi07g00244 368 SUPERFAMILY Protein kinase-like (PK-like) 24 325 IPR011009 -
Lsi07g00244 368 Gene3D Transferase(Phosphotransferase) domain 1 116 345 - -
Lsi07g00244 368 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 11 364 - -
Lsi07g00244 368 ProSitePatterns Protein kinases ATP-binding region signature. 38 62 IPR017441 GO:0005524
Lsi07g00244 368 Pfam Protein kinase domain 33 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi07g00244 368 ProSiteProfiles Protein kinase domain profile. 32 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi07g00244 368 Gene3D Phosphorylase Kinase; domain 1 19 350 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi01g00643 Lsi07g00244 CCT
Lsi01g00643 Lsi07g00244 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00244 Lsi-Chr7:2663814 Lsi08g01372 Lsi-Chr8:22013371 0 dispersed
Lsi07g00244 Lsi-Chr7:2663814 Lsi09g00226 Lsi-Chr9:2368024 3.13E-145 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83765 PF00069 Pkinase 1.00E-70 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00244 K20537 - csv:101203896 699.508