Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00245 ATGTTTTCAACGAAAGAGATGCCATCTCCACAGTCATTATTCTCAGCTTACGCCTCCATGGCCGGCTCCTTAATGCTGTTCCGATCAATGGCCAACGACCTTATCCCAGCCCCTGTTCGGTCGTACGTGGCTGCCGGAATCCGCCGCCTCTTCAACTCGCAGTCCTCTCTGTTCACTCTCATCATCGAAGAGACGAACGGCATATCCCCAAATCAAATATTTGAAGCCGCCGAGATCTACCTGTCCACGAAAATCACCTCCGACACCGGCCGCCTCCGCATCTCAAAAACCCCAAAAGACAAAAACCCAACTCTCCGCCTTGAAAAGGGCGAGGAATTAACCGATTCCTTCGACGGAATCCCATTGTTATGGATCTTCAATTCCCAAGACCACGACAAAAACTCCAACAACCCCAACAACGGCCCCACTCTGTTTCCACCAAAAGCAGAGCGCCGCTACTTTGAGCTGAAATTCGACAAAACCCACCGTCACAAAATCCTGAATTCCTACATCACCTTTCTGCTGGACCGTGCTCTGGCCATGAAAAACCAAGAGAGGACTCTGAAAATGTACACAATGAACAACTCCGGGTGCTACAGCGGGAAATGGGAATCGGTGAATTTGGAGCACCCGGCGACATTTGAGACGGTGGCGATGGAGGCGGAGGGGAAGAAGGCAGTGATGGAAGATTTGGACAGGTTTTTGAAGAGGAAGGAGTTTTACAAGAGAGTTGGGAGGGCGTGGAAAAGAGGGTATTTGTTGTATGGGCCACCGGGAACAGGGAAATCGAGCTTGGTGGCGGCGATGGCGAATTACTTGAAGTTTGATATATATGATCTGCAATTAGGGAATGTGGTGCAGGATTCTGATTTGAGGAAGCTGCTTTTGACGACGGGGAATCGCTCCATTTTGGTCATTGAAGATATTGATTGTACTGTTGAGCTGCCTGATCGCCGCCACGGTGATTGGCCCAACCATCCTCATGAAATTCAGCTCACGTTGTCAGGGCTTTTGAACTTCATCGACGGGCTATGGTCAAGCTGTGGCGACGAGAGGATCATAATCTTTACAACGAACAACAAGGATCGCCTCGACCCGGCGCTGCTGCGGCCAGGGCGGATGGATATGCATATTCACATGTCATATTGCACCTTCCATGCCTTTAAGCTTCTAGCATCAAACTACTTGCAAATCGGTCACACCGGACACCGCCTCTTCCCGGAGATCGAAACCCTTCTCGATGCCACGGAAGTCACACCGGCCCAGATCGCGGAGGAGCTGATGAAGAGTGAGGATGCTGATGTATCCCTTGAAGGGCTGGTTAAGGTGCTGAAGAGGAAGAAGCTGGAGCAGGAGGAGGAGGATAATGGTAATGGTGAAGATGGTGAAGAAGAAGGTAAGTTGAGAGAGGCTAAGAGATTGAAAGTAGAGAAAAAGAAAAAAAGAAAAAGAAAATTATACTCTAATAGTGGTTATTTAGGTAAGGAAAATTCCTTTTTCAACTTTCTTATCCAGTAG 1518 48.88 MFSTKEMPSPQSLFSAYASMAGSLMLFRSMANDLIPAPVRSYVAAGIRRLFNSQSSLFTLIIEETNGISPNQIFEAAEIYLSTKITSDTGRLRISKTPKDKNPTLRLEKGEELTDSFDGIPLLWIFNSQDHDKNSNNPNNGPTLFPPKAERRYFELKFDKTHRHKILNSYITFLLDRALAMKNQERTLKMYTMNNSGCYSGKWESVNLEHPATFETVAMEAEGKKAVMEDLDRFLKRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDIYDLQLGNVVQDSDLRKLLLTTGNRSILVIEDIDCTVELPDRRHGDWPNHPHEIQLTLSGLLNFIDGLWSSCGDERIIIFTTNNKDRLDPALLRPGRMDMHIHMSYCTFHAFKLLASNYLQIGHTGHRLFPEIETLLDATEVTPAQIAEELMKSEDADVSLEGLVKVLKRKKLEQEEEDNGNGEDGEEEGKLREAKRLKVEKKKKRKRKLYSNSGYLGKENSFFNFLIQ 505
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2676561 2683497 - Lsi07G002450.1 Lsi07g00245 666667

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00245 505 Gene3D - 379 452 - -
Lsi07g00245 505 PANTHER BCS1 AAA-TYPE ATPASE 6 463 - -
Lsi07g00245 505 PANTHER BNAA10G17020D PROTEIN 6 463 - -
Lsi07g00245 505 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 165 433 IPR027417 -
Lsi07g00245 505 MobiDBLite consensus disorder prediction 450 484 - -
Lsi07g00245 505 Pfam Domain associated at C-terminal with AAA 35 126 IPR025753 -
Lsi07g00245 505 Gene3D - 202 378 IPR027417 -
Lsi07g00245 505 Pfam ATPase family associated with various cellular activities (AAA) 253 381 IPR003959 GO:0005524|GO:0016887
Lsi07g00245 505 SMART AAA_5 248 384 IPR003593 -
Lsi07g00245 505 CDD AAA 237 382 - -
Lsi07g00245 505 ProSitePatterns AAA-protein family signature. 352 370 IPR003960 GO:0005524|GO:0016887
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00245 - - - csv:101217052 801.586
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi01g00648 Lsi07g00245 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00245 Lsi-Chr7:2676561 Lsi02g00334 Lsi-Chr2:2852844 2.28E-110 dispersed
Lsi04g00665 Lsi-Chr4:6071816 Lsi07g00245 Lsi-Chr7:2676561 1.12E-149 transposed
Lsi04g01213 Lsi-Chr4:18691926 Lsi07g00245 Lsi-Chr7:2676561 1.28E-51 transposed
Lsi01g00647 Lsi-Chr1:5218173 Lsi07g00245 Lsi-Chr7:2676561 1.10E-162 wgd
Lsi04g01695 Lsi-Chr4:24348263 Lsi07g00245 Lsi-Chr7:2676561 5.06E-155 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1027 . . . Bda10g00144 . . . Bma15g00992 . . Cma03g00724 Cma07g00469 Car03g00663 . Sed14g1153 . Cpe10g00633 Bhi03g00924 Tan03g2018 Cmetu08g1706 . Hepe04g1547 . . Cla01g01938 Cam01g2025 Cec04g1683 Cco04g1747 Clacu01g2046 Cmu01g1922 Cre04g1599 Cone8ag0825 . Cone6ag1646 . Lsi01g00648 . Chy07g01254 Cme08g00882 . Blo06g00140 . . . . . . . Cmo03g00750 Cmo07g00466 . . . . . . . . . . . . . Cla07g00824 Cam07g0890 Cec07g0942 Cco07g0933 Clacu07g0864 Cmu07g0867 Cre07g1228 Lsi07g00245 Csa06g03274 Chy02g00617 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013760 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 0 24
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi07g00245 Lsi_Chr07 FPKM 0.713726 0.499555 0.807199 1.563402 2.044012 5.411313 2.984193 0.06838 0.215243 1.26762