Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00249 ATGGGAACATTGGGGAAGGCAATCTATACCGTCGGATTCTGGATCCGGGAGACCGGCCAAGCCCTCGATCGTCTTGGTTGCCGCCTCCAAGGGAATTACTACTTTCAAGAACAACTATCTAGGCATAGGACGCTCATGAACATATTTGACAAGGCTCCTGTGGTTGATAAGGATGCATTTGTGGCACCTAGCGCATCTATCATTGGTGATGTGCAGGTCGGACGAGGGTCCTCTATTTGGTATGGGTGTGTTTTGAGAGGTCACAGTGCTGTGTTACATGGATGTACTATTGAGGACGAGGCATTTGTGGGGATGGGAGCGACATTGCTTGATGGAGTCTACGTAGAAAGACATGCAATGGTTGCTGCTGGAGCACTTGTGAGGCAGAATACAAGGATCCCATGTGGAGAGGTATGGGGAGGCAATCCAGCCAAATTCCTGAGGAAGCTTACAGAAGAAGAGATGGCCTTTATCTCCCAGTCAGCCATCAATTATTCCAACTTATCACAGGTTCATGCAGCCGAAAACGTGAAGAGCTTTGATAAAATTGAATTTGAAAAGGCTCTTCGCAAAAAGTTTGCTCGTCGTGATGAAGATTATGATTCAATGCTGGGCGTTGTTCGTGAAACCCCCCCAGAGCTTGTCCTTCCAGATAACATACTGGCTGACAAAGTACCAAGATCTTCTTAA 690 47.1 MGTLGKAIYTVGFWIRETGQALDRLGCRLQGNYYFQEQLSRHRTLMNIFDKAPVVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGHSAVLHGCTIEDEAFVGMGATLLDGVYVERHAMVAAGALVRQNTRIPCGEVWGGNPAKFLRKLTEEEMAFISQSAINYSNLSQVHAAENVKSFDKIEFEKALRKKFARRDEDYDSMLGVVRETPPELVLPDNILADKVPRSS 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2749769 2754674 - Lsi07G002490.1 Lsi07g00249 666671

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00249 229 Gene3D Hexapeptide repeat proteins 35 88 - -
Lsi07g00249 229 PANTHER DYNACTIN SUBUNIT P25 1 87 - -
Lsi07g00249 229 PANTHER DYNACTIN SUBUNIT P25 87 228 - -
Lsi07g00249 229 SUPERFAMILY Trimeric LpxA-like enzymes 47 168 IPR011004 -
Lsi07g00249 229 PANTHER GAMMA CARBONIC ANHYDRASE 1, MITOCHONDRIAL 1 87 - -
Lsi07g00249 229 PANTHER GAMMA CARBONIC ANHYDRASE 1, MITOCHONDRIAL 87 228 - -
Lsi07g00249 229 Gene3D Hexapeptide repeat proteins 89 180 - -
Lsi07g00249 229 CDD LbH_gamma_CA_like 54 170 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00249 K01726 GAMMACA; gamma-carbonic anhydrase [EC:4.2.1.-] - csv:101204629 429.483
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00249 Lsi-Chr7:2749769 Lsi08g01382 Lsi-Chr8:22107161 4.84E-150 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g998 . . . . . Bpe13g00438 . . Cmo04g00810 Cmo16g00681 . . . . . . . . . . . . . . . . . . . . . . . Cone6ag1637 . . . Chy07g01248 . . . Bda11g01858 . . . . Bma06g00116 . . . Cma16g00625 . . . . Cpe14g00534 . . . . . . . Cla07g00818 Cam07g0882 Cec07g0935 Cco07g0923 Clacu07g0857 . . Lsi07g00249 Csa04g00555 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0025121 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 2
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi07g00249 Lsi_Chr07 FPKM 18.837105 21.705608 19.906292 22.36319 20.953796 19.728947 21.790792 24.94202 22.61875 23.708881