Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00258 ATGTCGCTTAAAAGCTTTGTTAGAGAGCTGCGAGAGATTAAAGATGGAATTGGGAGCATTTCTAAGCGAGGAGAAGAAGGGAGTAGGCATTGGCGAAACCGAACAATGTCACATATTGCACCAGATCAAGAACCTTCTCCATTGGAGTTAATTCAGCAAGGTCGATGGGCAAATCTGCCCCCTGAATTACTTTTAGACATCATCCGGAGAGTGGAAGAGAGTGAAACCTCGTGGCCTGCTCGAGCTGTAGTTGTTTTTTGTGCTTCAGTTTGTAGGTCTTGGAGGGCCATTACAAAGGAGATTATCAGAACTCCTGAGCAATGTGGAAGGCTCACATTTCCAATCTCATTAAAGCAGCCTGGCCCTCGGGAGTCTCCATTTCAGTGCTTCATCAGAAGGGATAGAGCAACTTCGACCTACCTCCTGTACTTTGGTTTGGTTCCTTCGGAGGACGAAAAGGATAAATTGTTGTTAGCAGCCAAGAGGGTCAGAAGAGCAGCCGGTACTGACTTTATCATATCTTTAGCAGCTGATGATTTTTCTCGAGCGAGTAGTACCTATGTTGGTAAATTAAGGTCTAATTTTCTGGGTACAAAGTTCTCGATTTATGACAGCCAGCCTCCTTGTGACCCTGCAACTCGGCAAAATAGCCGGTCAAGCCGTAGATTTCGCTCTAAGCAAGTCTCTCCTAGGGTTCCTGCATGTAACTACAGTGTAGGTACAATTTCTTATGAACTTAATGTTCTTCGTACTAGAGGTCCTCGGAGGATGCAGTGCATCATGCAAACGATTCCGGTCTCTTCAATTCAGGAGGGAGGCACTGCCCCAACTCCTACATCATTCACATACTCTATCGACGACCACCTTTCTTCCATGTCGGATTCTATGAGAAAGGATTCAGTGAAGGACTTTGGCTCAAAGATCCAATCAGAACCAGCAGTTCAGTGCTCGGATGAATCCTTGGTACTTAAAAACAAGGCACCGAGATGGCACGAGCAGCTGCAGTGCTGGTGCCTAAATTTCAGAGGACGTGTGACTGTGGCATCTGTTAAGAACTTCCAACTCGTTGCTGCTGTTGATCAATCTCACAACGTTTCAGTGGAAGAGCAAGAGAAGGTAATTCTCCAGTTCGGAAAAATTGGAAAAGACATCTTCACCATGGATTACCATTATCCGCTCTCTGCATTCCAAGCCTTTGCAATCTGCTTGAGCAGCTTCGACACGAAGCCAGCCTGCGAATGA 1242 45.97 MSLKSFVRELREIKDGIGSISKRGEEGSRHWRNRTMSHIAPDQEPSPLELIQQGRWANLPPELLLDIIRRVEESETSWPARAVVVFCASVCRSWRAITKEIIRTPEQCGRLTFPISLKQPGPRESPFQCFIRRDRATSTYLLYFGLVPSEDEKDKLLLAAKRVRRAAGTDFIISLAADDFSRASSTYVGKLRSNFLGTKFSIYDSQPPCDPATRQNSRSSRRFRSKQVSPRVPACNYSVGTISYELNVLRTRGPRRMQCIMQTIPVSSIQEGGTAPTPTSFTYSIDDHLSSMSDSMRKDSVKDFGSKIQSEPAVQCSDESLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVDQSHNVSVEEQEKVILQFGKIGKDIFTMDYHYPLSAFQAFAICLSSFDTKPACE 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2829163 2832345 - Lsi07G002580.1 Lsi07g00258 666680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00258 413 SUPERFAMILY Tubby C-terminal domain-like 105 413 IPR025659 -
Lsi07g00258 413 PRINTS Tubby superfamily signature 187 211 IPR000007 -
Lsi07g00258 413 PRINTS Tubby superfamily signature 370 389 IPR000007 -
Lsi07g00258 413 PRINTS Tubby superfamily signature 171 187 IPR000007 -
Lsi07g00258 413 PRINTS Tubby superfamily signature 391 413 IPR000007 -
Lsi07g00258 413 PRINTS Tubby superfamily signature 236 263 IPR000007 -
Lsi07g00258 413 PRINTS Tubby superfamily signature 341 357 IPR000007 -
Lsi07g00258 413 PRINTS Tubby superfamily signature 323 340 IPR000007 -
Lsi07g00258 413 Gene3D Tubby Protein; Chain A 115 413 IPR025659 -
Lsi07g00258 413 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 413 - -
Lsi07g00258 413 PANTHER TUBBY-RELATED 1 413 - -
Lsi07g00258 413 MobiDBLite consensus disorder prediction 206 227 - -
Lsi07g00258 413 ProSitePatterns Tub family signature 2. 398 413 IPR018066 -
Lsi07g00258 413 Gene3D - 50 104 - -
Lsi07g00258 413 Pfam F-box domain 56 102 IPR001810 GO:0005515
Lsi07g00258 413 SUPERFAMILY F-box domain 50 100 IPR036047 GO:0005515
Lsi07g00258 413 Pfam Tub family 117 408 IPR000007 -
Lsi07g00258 413 ProSitePatterns Tub family signature 1. 341 354 IPR018066 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi01g00669 Lsi07g00258 CCT
Lsi01g00669 Lsi07g00258 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00258 Lsi-Chr7:2829163 Lsi08g00555 Lsi-Chr8:13741039 1.05E-155 dispersed
Lsi05g00201 Lsi-Chr5:2777209 Lsi07g00258 Lsi-Chr7:2829163 2.17E-155 transposed
Lsi01g00669 Lsi-Chr1:5398418 Lsi07g00258 Lsi-Chr7:2829163 4.11E-180 wgd
Lsi04g01686 Lsi-Chr4:24240314 Lsi07g00258 Lsi-Chr7:2829163 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25599 PF01167 Tub 1.20E-106 CL0395 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00258 K19600 - csv:101205595 794.267