Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00267 ATGAGAACACTTTGTGACGCTTGTGAAAGCGCTGCCGCTATCGTCTTTTGTGCTGCTGACGAGGCCGCCCTTTGCCGCTCTTGTGACGAGAAGGTCCATATGTGCAATAAACTCGCAAGTCGACATGTAAGAGTTGGCCTTGCAAGTCCCAGTGATGTTCCCCGTTGTGATATATGCGAGAATGCACCTGCTTTCTTTTACTGTGAGATAGATGGAAGTTCCCTTTGTTTGCAATGTGACATGATCGTTCATGTTGGAGGGAAAAGGACACATAAGAGGTACCTTTTGCTACGGCAGAGGGTCGAGTTTCCAGGAGACAAACCTATAAATCTTGATGATCCGTCTCCACATTCCAAGGTTCCCAATGAGATTGGTAAAGTACATAATCAGCCACCACCGCATAAAGTGACATTAGAAGACAACCAGCAAAATCATCACCGACTATCACCTGTTCAAGAGGCTAACGATGATGGTCATGCCGAGACTGATACGAAAATGATTGATTTGAATATGAAGCCTCAAAGGGTCCATGGGCAGGCTGCTAATAATCAGTTCGGATTGGCGTCGATACCGTCAAGAATGGGGAAGATCCCGACAACTGCTCGATTGTGGTTGGTGGTGACGGCGGTGGCGTTGTCCTCTCCGGCGTTCATAACCGGCCACGTTACGCCTCGCACTGTACTTCATCGGTTGTCTTCAAGCAGCTCGTTTTTAACCCGGACGGAGATTTGGTTTAACCAGACCCTCGATCACTTCTCTCCTTATAACCATGATAAGTTTCAGCAGCGCTATTATGAGTTCCTTGACTACTTTCGGATTCCAGATGGACCGATTTTTTTAAAAATCTGTGGTGAAGGCCCGTGCAGTGGGATAAGCAATGATTACCTTGGTGTTTTGGCAAAGAAGTTTGGAGCAGCTATTGTTTCTCTTGAGCATCGCTACTATGGGAAGAGTTCCCCTTTCAAGTCATTGACGACAAATAACTTGAGATATCTTTCGTCCAAGCAAGCTTTGTTTGATTTGGCTGTTTTCCGCCAGTACTACCAGGATTCATTAAATCTGAAACTGAACAAAAAGAGTGAAAACCCGTGGTTCTTTTTTGGTGTTTCATATCCTGGAGCTCTTAGTGCGTGGTTTCGACTTAAGTTCCCTCATTTAACATGTGGAAGTCTTGCAAGTTCTGCTGTTGTTCTCGCTGTCTATAACTTTACTGAATTTGACCAACAGATTGGTGAGTCTGCCGGTCCAGAGTGCAAGGCTGCTTTACAAGAAACCAATCGACTTGTTGAACAAAGATTTGCAACAAACAAAAAAGAAGTGAAGGCATTGTTTGGCGCGGGAGAGCTGGAAATAGATGGAGATTTCTTTTATTTACTAGCAGATGCAGCTGTCATAGCGTTTCAATATGGAAATCCAGATACGTTGTGCTCTCCTCTTGTTCAAGCAAAGAATGCAGGAAATGACTTAGTGGATGCCTTTGCCAAATATGTTAAAGATTATTTCATTGGAAGTTTTGGCACTAATGTTCAGACTTACGATCAGAAACATTTAAAAAACACCACTCCAGGTGAAGATAGTGCGGACCGGTTGTGGTGGTTTCAAGTTTGTACTGAAGTTGCATATTTCCAGGTTGCCCCAGCAAATGATAGCATGCGCTCCTCCAAAGTGGATGCAAACTCACGTAATGACAGATATCATCTAGATCTCTGTAAGAACGTTTTTGGAGAGGGCATCTATCCGGATGTAGACACCACAAATATTTATTATGGAGGCACAAAAATTGCAGCTCTTTTTGGCCAGTTTGACATACTATGTTCAAAAATAGTTTTTACAAATGGTTCACAAGATCCTTGGCGCCATGCATCCAAGCAAATATCATCTCCAGAGATGCCATCGTACCTCATAACATGTCACAATTGTGGCCATGGAACTGATTTGCGAGGATGCCCTCAATCTCATCTAAATATTGAAGGTATATTCAAATGGCATTGTAGAAATGGATCTCTTCTTTAG 2013 43.42 MRTLCDACESAAAIVFCAADEAALCRSCDEKVHMCNKLASRHVRVGLASPSDVPRCDICENAPAFFYCEIDGSSLCLQCDMIVHVGGKRTHKRYLLLRQRVEFPGDKPINLDDPSPHSKVPNEIGKVHNQPPPHKVTLEDNQQNHHRLSPVQEANDDGHAETDTKMIDLNMKPQRVHGQAANNQFGLASIPSRMGKIPTTARLWLVVTAVALSSPAFITGHVTPRTVLHRLSSSSSFLTRTEIWFNQTLDHFSPYNHDKFQQRYYEFLDYFRIPDGPIFLKICGEGPCSGISNDYLGVLAKKFGAAIVSLEHRYYGKSSPFKSLTTNNLRYLSSKQALFDLAVFRQYYQDSLNLKLNKKSENPWFFFGVSYPGALSAWFRLKFPHLTCGSLASSAVVLAVYNFTEFDQQIGESAGPECKAALQETNRLVEQRFATNKKEVKALFGAGELEIDGDFFYLLADAAVIAFQYGNPDTLCSPLVQAKNAGNDLVDAFAKYVKDYFIGSFGTNVQTYDQKHLKNTTPGEDSADRLWWFQVCTEVAYFQVAPANDSMRSSKVDANSRNDRYHLDLCKNVFGEGIYPDVDTTNIYYGGTKIAALFGQFDILCSKIVFTNGSQDPWRHASKQISSPEMPSYLITCHNCGHGTDLRGCPQSHLNIEGIFKWHCRNGSLL 670
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2909441 2923151 - Lsi07G002670.1 Lsi07g00267 666689

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00267 670 SUPERFAMILY alpha/beta-Hydrolases 268 474 IPR029058 -
Lsi07g00267 670 PANTHER PROTEASE S28 PRO-X CARBOXYPEPTIDASE-RELATED 222 653 - -
Lsi07g00267 670 MobiDBLite consensus disorder prediction 107 138 - -
Lsi07g00267 670 Gene3D Classic Zinc Finger 2 95 - -
Lsi07g00267 670 CDD Bbox1_BBX-like 4 47 - -
Lsi07g00267 670 Gene3D alpha/beta hydrolase 244 648 IPR029058 -
Lsi07g00267 670 Gene3D Serine carboxypeptidase S28, SKS domain 405 555 IPR042269 -
Lsi07g00267 670 CDD Bbox1_BBX-like 56 96 - -
Lsi07g00267 670 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Lsi07g00267 670 PANTHER OS10G0511600 PROTEIN 222 653 - -
Lsi07g00267 670 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270
Lsi07g00267 670 Pfam B-box zinc finger 52 92 IPR000315 GO:0008270
Lsi07g00267 670 Pfam Serine carboxypeptidase S28 247 647 IPR008758 GO:0006508|GO:0008236
Lsi07g00267 670 SMART bboxneu5 1 47 IPR000315 GO:0008270
Lsi07g00267 670 SMART bboxneu5 51 96 IPR000315 GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00267 - - - bhj:120092798 889.412
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi01g00703 Lsi07g00267 CCT
Lsi01g00703 Lsi07g00267 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00267 Lsi-Chr7:2909441 Lsi10g00420 Lsi-Chr10:6364840 1.11E-36 dispersed
Lsi08g01348 Lsi-Chr8:21779307 Lsi07g00267 Lsi-Chr7:2909441 1.21E-21 dispersed
Lsi11g00365 Lsi-Chr11:3781101 Lsi07g00267 Lsi-Chr7:2909441 3.05E-21 dispersed
Lsi07g00267 Lsi-Chr7:2909441 Lsi01g00620 Lsi-Chr1:4986878 6.18E-72 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g923 Blo04g00928 . . Bda10g00120 Bpe15g00439 . . Bma15g01008 . . . Cma07g00506 . . . Cpe19g00794 Cpe10g00590 Bhi03g01262 . . . . . . Cla01g01883 . . . . . . . Cone12ag0758 Cone6ag1605 Cone9ag1529 Lsi01g00703 . . Cme08g00822 . . . . Bpe10g00105 . . . . Cmo03g00805 Cmo07g00505 . . . . . . . . . . . . . . . . . . . . Lsi07g00267 Csa06g03213 Chy02g00672 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi08g01266 . 1 337 C2C2-CO-like Transcription Factor Family AT5G24930 60.3 6.0e-81 298.1
Lsi06g01109 CCT 20 374 C2C2-CO-like Transcription Factor Family AT5G24930 50.3 1.1e-55 214.2
Lsi06g01109 CCT 5 374 C2C2-CO-like Transcription Factor Family AT5G57660 50.9 7.0e-66 248.1
Lsi08g01266 . 2 337 C2C2-CO-like Transcription Factor Family AT5G57660 51.3 4.3e-55 212.2
Lsi10g00033 . 1 416 C2C2-CO-like Transcription Factor Family AT3G07650 54.7 2.3e-91 332.8
Lsi11g01330 . 1 407 C2C2-CO-like Transcription Factor Family AT3G07650 54.5 4.7e-89 325.1
Lsi10g00033 . 1 416 C2C2-CO-like Transcription Factor Family AT5G48250 54.8 1.4e-88 323.6
Lsi11g01330 . 1 407 C2C2-CO-like Transcription Factor Family AT5G48250 55.5 3.4e-87 318.9
Lsi10g00033 . 1 416 C2C2-CO-like Transcription Factor Family AT5G48250 54.8 1.4e-88 323.6
Lsi11g01330 . 1 407 C2C2-CO-like Transcription Factor Family AT5G48250 55.5 3.4e-87 318.9
Lsi11g01136 . 1 207 C2C2-CO-like Transcription Factor Family AT1G75540 55.0 5.4e-52 201.8
Lsi07g00290 . 1 298 C2C2-CO-like Transcription Factor Family AT1G78600 50.9 6.1e-77 284.6
Lsi07g00267 CCT,ECH 1 184 C2C2-CO-like Transcription Factor Family AT2G21320 63.0 7.1e-56 213.8
Lsi01g00620 . 1 117 C2C2-CO-like Transcription Factor Family AT2G21320 76.9 4.5e-50 194.5
Lsi07g00267 CCT,ECH 1 183 C2C2-CO-like Transcription Factor Family AT4G38960 64.5 1.1e-57 219.9
Lsi01g00620 . 1 110 C2C2-CO-like Transcription Factor Family AT4G38960 80.9 1.4e-49 193.0
Lsi11g01136 . 1 197 C2C2-CO-like Transcription Factor Family AT4G39070 59.9 7.7e-56 214.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003706 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 2 2 1 2 7 2 1 46
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25600 PF05577 Peptidase_S28 8.20E-73 CL0028 Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi07g00267 Lsi_Chr07 FPKM 2.517166 1.085921 1.733363 2.085833 9.963085 7.887729 10.254704 2.141074 1.479434 1.749913