Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00267 ATGAGAACACTTTGTGACGCTTGTGAAAGCGCTGCCGCTATCGTCTTTTGTGCTGCTGACGAGGCCGCCCTTTGCCGCTCTTGTGACGAGAAGGTCCATATGTGCAATAAACTCGCAAGTCGACATGTAAGAGTTGGCCTTGCAAGTCCCAGTGATGTTCCCCGTTGTGATATATGCGAGAATGCACCTGCTTTCTTTTACTGTGAGATAGATGGAAGTTCCCTTTGTTTGCAATGTGACATGATCGTTCATGTTGGAGGGAAAAGGACACATAAGAGGTACCTTTTGCTACGGCAGAGGGTCGAGTTTCCAGGAGACAAACCTATAAATCTTGATGATCCGTCTCCACATTCCAAGGTTCCCAATGAGATTGGTAAAGTACATAATCAGCCACCACCGCATAAAGTGACATTAGAAGACAACCAGCAAAATCATCACCGACTATCACCTGTTCAAGAGGCTAACGATGATGGTCATGCCGAGACTGATACGAAAATGATTGATTTGAATATGAAGCCTCAAAGGGTCCATGGGCAGGCTGCTAATAATCAGTTCGGATTGGCGTCGATACCGTCAAGAATGGGGAAGATCCCGACAACTGCTCGATTGTGGTTGGTGGTGACGGCGGTGGCGTTGTCCTCTCCGGCGTTCATAACCGGCCACGTTACGCCTCGCACTGTACTTCATCGGTTGTCTTCAAGCAGCTCGTTTTTAACCCGGACGGAGATTTGGTTTAACCAGACCCTCGATCACTTCTCTCCTTATAACCATGATAAGTTTCAGCAGCGCTATTATGAGTTCCTTGACTACTTTCGGATTCCAGATGGACCGATTTTTTTAAAAATCTGTGGTGAAGGCCCGTGCAGTGGGATAAGCAATGATTACCTTGGTGTTTTGGCAAAGAAGTTTGGAGCAGCTATTGTTTCTCTTGAGCATCGCTACTATGGGAAGAGTTCCCCTTTCAAGTCATTGACGACAAATAACTTGAGATATCTTTCGTCCAAGCAAGCTTTGTTTGATTTGGCTGTTTTCCGCCAGTACTACCAGGATTCATTAAATCTGAAACTGAACAAAAAGAGTGAAAACCCGTGGTTCTTTTTTGGTGTTTCATATCCTGGAGCTCTTAGTGCGTGGTTTCGACTTAAGTTCCCTCATTTAACATGTGGAAGTCTTGCAAGTTCTGCTGTTGTTCTCGCTGTCTATAACTTTACTGAATTTGACCAACAGATTGGTGAGTCTGCCGGTCCAGAGTGCAAGGCTGCTTTACAAGAAACCAATCGACTTGTTGAACAAAGATTTGCAACAAACAAAAAAGAAGTGAAGGCATTGTTTGGCGCGGGAGAGCTGGAAATAGATGGAGATTTCTTTTATTTACTAGCAGATGCAGCTGTCATAGCGTTTCAATATGGAAATCCAGATACGTTGTGCTCTCCTCTTGTTCAAGCAAAGAATGCAGGAAATGACTTAGTGGATGCCTTTGCCAAATATGTTAAAGATTATTTCATTGGAAGTTTTGGCACTAATGTTCAGACTTACGATCAGAAACATTTAAAAAACACCACTCCAGGTGAAGATAGTGCGGACCGGTTGTGGTGGTTTCAAGTTTGTACTGAAGTTGCATATTTCCAGGTTGCCCCAGCAAATGATAGCATGCGCTCCTCCAAAGTGGATGCAAACTCACGTAATGACAGATATCATCTAGATCTCTGTAAGAACGTTTTTGGAGAGGGCATCTATCCGGATGTAGACACCACAAATATTTATTATGGAGGCACAAAAATTGCAGCTCTTTTTGGCCAGTTTGACATACTATGTTCAAAAATAGTTTTTACAAATGGTTCACAAGATCCTTGGCGCCATGCATCCAAGCAAATATCATCTCCAGAGATGCCATCGTACCTCATAACATGTCACAATTGTGGCCATGGAACTGATTTGCGAGGATGCCCTCAATCTCATCTAAATATTGAAGGTATATTCAAATGGCATTGTAGAAATGGATCTCTTCTTTAG 2013 43.42 MRTLCDACESAAAIVFCAADEAALCRSCDEKVHMCNKLASRHVRVGLASPSDVPRCDICENAPAFFYCEIDGSSLCLQCDMIVHVGGKRTHKRYLLLRQRVEFPGDKPINLDDPSPHSKVPNEIGKVHNQPPPHKVTLEDNQQNHHRLSPVQEANDDGHAETDTKMIDLNMKPQRVHGQAANNQFGLASIPSRMGKIPTTARLWLVVTAVALSSPAFITGHVTPRTVLHRLSSSSSFLTRTEIWFNQTLDHFSPYNHDKFQQRYYEFLDYFRIPDGPIFLKICGEGPCSGISNDYLGVLAKKFGAAIVSLEHRYYGKSSPFKSLTTNNLRYLSSKQALFDLAVFRQYYQDSLNLKLNKKSENPWFFFGVSYPGALSAWFRLKFPHLTCGSLASSAVVLAVYNFTEFDQQIGESAGPECKAALQETNRLVEQRFATNKKEVKALFGAGELEIDGDFFYLLADAAVIAFQYGNPDTLCSPLVQAKNAGNDLVDAFAKYVKDYFIGSFGTNVQTYDQKHLKNTTPGEDSADRLWWFQVCTEVAYFQVAPANDSMRSSKVDANSRNDRYHLDLCKNVFGEGIYPDVDTTNIYYGGTKIAALFGQFDILCSKIVFTNGSQDPWRHASKQISSPEMPSYLITCHNCGHGTDLRGCPQSHLNIEGIFKWHCRNGSLL 670
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2909441 2923151 - Lsi07G002670.1 Lsi07g00267 666689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00267 670 SUPERFAMILY alpha/beta-Hydrolases 268 474 IPR029058 -
Lsi07g00267 670 PANTHER PROTEASE S28 PRO-X CARBOXYPEPTIDASE-RELATED 222 653 - -
Lsi07g00267 670 MobiDBLite consensus disorder prediction 107 138 - -
Lsi07g00267 670 Gene3D Classic Zinc Finger 2 95 - -
Lsi07g00267 670 CDD Bbox1_BBX-like 4 47 - -
Lsi07g00267 670 Gene3D alpha/beta hydrolase 244 648 IPR029058 -
Lsi07g00267 670 Gene3D Serine carboxypeptidase S28, SKS domain 405 555 IPR042269 -
Lsi07g00267 670 CDD Bbox1_BBX-like 56 96 - -
Lsi07g00267 670 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Lsi07g00267 670 PANTHER OS10G0511600 PROTEIN 222 653 - -
Lsi07g00267 670 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270
Lsi07g00267 670 Pfam B-box zinc finger 52 92 IPR000315 GO:0008270
Lsi07g00267 670 Pfam Serine carboxypeptidase S28 247 647 IPR008758 GO:0006508|GO:0008236
Lsi07g00267 670 SMART bboxneu5 1 47 IPR000315 GO:0008270
Lsi07g00267 670 SMART bboxneu5 51 96 IPR000315 GO:0008270
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi01g00703 Lsi07g00267 CCT
Lsi01g00703 Lsi07g00267 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00267 Lsi-Chr7:2909441 Lsi10g00420 Lsi-Chr10:6364840 1.11E-36 dispersed
Lsi08g01348 Lsi-Chr8:21779307 Lsi07g00267 Lsi-Chr7:2909441 1.21E-21 dispersed
Lsi11g00365 Lsi-Chr11:3781101 Lsi07g00267 Lsi-Chr7:2909441 3.05E-21 dispersed
Lsi07g00267 Lsi-Chr7:2909441 Lsi01g00620 Lsi-Chr1:4986878 6.18E-72 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25600 PF05577 Peptidase_S28 8.20E-73 CL0028 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00267 - - bhj:120092798 889.412