Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00278 ATGGATGATTTTGGTTCATCTTCTAGATTTCATCATCATCAGTACTACAACTTTGAGAGTAGCAGCAGCAACAGCAACAACAACAGAAGAAGCAGAGATTTTGATGATGATGAACAACAACAACAACAAGAAGATCAAGATCATCAAGAAATGGAAGAATGTTGTAACAACAACAAGAACAATAATAGTAACAATTGTTCTGTTTTTGTAGAGAAAGAGCATATGTTCGACAAGGTTGTAACTCCAAGCGATGTGGGAAAATTAAACCGTTTAGTTATCCCAAAACAACACGCAGAAAAGTACTTCCCACTTGATTCTTCATCCAACGAGAAAGGACTTCTCTTAAACTTTGAAGACCGATGTGGTAAGCTTTGGCGATTCCGTTACTCTTACTGGACCAGCAGCCAAAGCTATGTAATGACCAAAGGTTGGAGCCGCTTTGTCAAAGACAAAAAACTTGATGCTGGTGATATTGTCTCTTTTCAAAGACCTCTCCATCATTCTAAAGATCGTTTCTTTATTGATTGGCGTCGCCGCCCTCTTCATCCCACCCTCGATCCTCCTTTTCATTTCCACCGCCGCCCTGTTCCCGGCCAATTTCCTCCCCATTTTCACCTTAATCCACTCCCCACACCCTTATCTCTACACAGGGACCACCTCCTCCACTTGCCGCATAATAATAATCTCAATTTATTTCATAATACCTATAATCATCCTCATTATCATCATCATCATCATAATCCCGTTCTTGACGGTTCGTATGATGGGGCGTTGGTTTTCAACAATTTGAGATCCCCCACCGCACCACCCCAGATAGAGGCAGTGCCGGTTGTAGAGGATGGTAGTGGTAGTGGTGGTGGTGGTGGAAAAACGGTTGCGGCGGGTAAGACGACATTGAGGCTTTTTGGTGTCAATATGGAATGTGCAGTATCTGAAGAGTCTGGTGATGATGAATGTGATATAGCAACAACTTCAACGACAACAATGTCGTCGCCGTCGTCTCAATTCCATGTTTATGATGGAATGCCGATGCCAATGTTGATGCCGATGTCGATGCAAATGTCAACGAACAATAACAACGTATCGACGACTATGGAGTTCTTCGAGAAAGGGAAGTCGTCGATTTCGTCGTCCTTTGATTTTGGTACTTGA 1152 42.8 MDDFGSSSRFHHHQYYNFESSSSNSNNNRRSRDFDDDEQQQQQEDQDHQEMEECCNNNKNNNSNNCSVFVEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSNEKGLLLNFEDRCGKLWRFRYSYWTSSQSYVMTKGWSRFVKDKKLDAGDIVSFQRPLHHSKDRFFIDWRRRPLHPTLDPPFHFHRRPVPGQFPPHFHLNPLPTPLSLHRDHLLHLPHNNNLNLFHNTYNHPHYHHHHHNPVLDGSYDGALVFNNLRSPTAPPQIEAVPVVEDGSGSGGGGGKTVAAGKTTLRLFGVNMECAVSEESGDDECDIATTSTTTMSSPSSQFHVYDGMPMPMLMPMSMQMSTNNNNVSTTMEFFEKGKSSISSSFDFGT 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3012866 3014017 + Lsi07G002780.1 Lsi07g00278 666700

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00278 383 SMART B3_2 76 180 IPR003340 GO:0003677
Lsi07g00278 383 Gene3D - 69 184 IPR015300 -
Lsi07g00278 383 SUPERFAMILY DNA-binding pseudobarrel domain 73 178 IPR015300 -
Lsi07g00278 383 MobiDBLite consensus disorder prediction 15 56 - -
Lsi07g00278 383 CDD B3_DNA 74 163 IPR003340 GO:0003677
Lsi07g00278 383 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 29 353 IPR044800 GO:0003700
Lsi07g00278 383 Pfam B3 DNA binding domain 76 179 IPR003340 GO:0003677
Lsi07g00278 383 ProSiteProfiles B3 DNA-binding domain profile. 76 180 IPR003340 GO:0003677
Lsi07g00278 383 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR NGA2 29 353 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00278 - - - bhj:120090999 479.944
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00278 Lsi-Chr7:3012866 Lsi09g00114 Lsi-Chr9:1086117 2.00E-61 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi03g01863 . 1 156 RAV Transcription Factor Family AT2G36080 62.8 3.8e-49 191.4
Lsi09g01706 . 81 195 RAV Transcription Factor Family AT2G36080 68.6 4.5e-42 167.9
Lsi09g00114 . 49 158 RAV Transcription Factor Family AT2G36080 69.0 1.2e-39 159.8
Lsi07g00278 . 68 179 RAV Transcription Factor Family AT2G36080 69.2 2.1e-39 159.1
Lsi09g00114 . 49 164 RAV Transcription Factor Family AT2G46870 87.2 2.0e-56 216.5
Lsi07g00278 . 71 311 RAV Transcription Factor Family AT2G46870 54.1 6.0e-53 204.9
Lsi09g01706 . 81 322 RAV Transcription Factor Family AT2G46870 50.6 2.1e-50 196.4
Lsi04g00288 . 183 293 RAV Transcription Factor Family AT2G46870 69.6 1.7e-39 160.2
Lsi03g01863 . 35 152 RAV Transcription Factor Family AT2G46870 66.1 8.4e-39 157.9
Lsi03g01863 . 37 163 RAV Transcription Factor Family AT3G11580 65.9 2.9e-44 175.6
Lsi09g01706 . 69 202 RAV Transcription Factor Family AT3G11580 56.6 7.3e-40 161.0
Lsi09g00114 . 49 160 RAV Transcription Factor Family AT3G11580 61.8 6.2e-39 157.9
Lsi07g00278 . 65 179 RAV Transcription Factor Family AT3G11580 61.7 1.8e-38 156.4
Lsi07g00278 . 70 308 RAV Transcription Factor Family AT3G61970 51.0 1.7e-52 203.4
Lsi09g00114 . 48 164 RAV Transcription Factor Family AT3G61970 80.8 2.2e-52 203.0
Lsi09g01706 . 82 203 RAV Transcription Factor Family AT3G61970 76.8 4.3e-48 188.7
Lsi04g00288 . 183 293 RAV Transcription Factor Family AT3G61970 71.4 8.1e-39 157.9
Lsi09g01706 . 54 195 RAV Transcription Factor Family AT4G01500 60.3 1.0e-42 171.0
Lsi09g00114 . 50 161 RAV Transcription Factor Family AT4G01500 69.7 6.6e-42 168.3
Lsi07g00278 . 72 179 RAV Transcription Factor Family AT4G01500 65.5 4.5e-38 155.6
Lsi09g01706 . 84 195 RAV Transcription Factor Family AT5G06250 63.1 1.1e-39 160.6
Lsi09g00114 . 50 158 RAV Transcription Factor Family AT5G06250 64.7 1.9e-39 159.8
Lsi06g01166 . 45 340 RAV Transcription Factor Family AT1G50680 52.4 9.3e-84 307.4
Lsi06g00469 . 47 357 RAV Transcription Factor Family AT1G50680 51.0 2.2e-77 286.2
Lsi06g01166 . 41 340 RAV Transcription Factor Family AT1G51120 52.5 6.7e-85 311.2
Lsi06g00469 . 52 266 RAV Transcription Factor Family AT1G51120 63.2 7.9e-78 287.7
Lsi04g00288 . 27 349 RAV Transcription Factor Family AT1G13260 65.0 4.8e-104 374.8
Lsi09g01022 . 29 313 RAV Transcription Factor Family AT1G13260 63.9 2.2e-93 339.3
Lsi09g00114 . 51 158 RAV Transcription Factor Family AT1G13260 71.6 7.8e-38 154.8
Lsi03g01863 . 44 153 RAV Transcription Factor Family AT1G13260 69.1 2.3e-37 153.3
Lsi09g01706 . 80 195 RAV Transcription Factor Family AT1G13260 65.0 1.5e-36 150.6
Lsi04g00288 . 6 347 RAV Transcription Factor Family AT3G25730 60.8 1.2e-99 360.1
Lsi09g01022 . 29 314 RAV Transcription Factor Family AT3G25730 63.3 3.8e-90 328.6
Lsi03g01863 . 28 153 RAV Transcription Factor Family AT3G25730 61.9 3.8e-37 152.5
Lsi04g00288 . 1 350 RAV Transcription Factor Family AT1G68840 61.0 1.6e-110 396.4
Lsi09g01022 . 24 317 RAV Transcription Factor Family AT1G68840 60.8 3.5e-94 342.0
Lsi03g01863 . 44 169 RAV Transcription Factor Family AT1G68840 65.4 9.5e-39 157.9
Lsi09g00114 . 50 158 RAV Transcription Factor Family AT1G68840 70.3 1.6e-38 157.1
Lsi09g01706 . 84 202 RAV Transcription Factor Family AT1G68840 63.6 1.8e-37 153.7
Lsi04g00288 . 6 347 RAV Transcription Factor Family AT3G25730 60.8 1.2e-99 360.1
Lsi09g01022 . 29 314 RAV Transcription Factor Family AT3G25730 63.3 3.8e-90 328.6
Lsi03g01863 . 28 153 RAV Transcription Factor Family AT3G25730 61.9 3.8e-37 152.5
Lsi06g01166 . 41 340 RAV Transcription Factor Family AT1G51120 52.5 6.7e-85 311.2
Lsi06g00469 . 52 266 RAV Transcription Factor Family AT1G51120 63.2 7.9e-78 287.7
Lsi03g01863 . 37 163 RAV Transcription Factor Family AT3G11580 65.9 2.9e-44 175.6
Lsi09g01706 . 69 202 RAV Transcription Factor Family AT3G11580 56.6 7.3e-40 161.0
Lsi09g00114 . 49 160 RAV Transcription Factor Family AT3G11580 61.8 6.2e-39 157.9
Lsi07g00278 . 65 179 RAV Transcription Factor Family AT3G11580 61.7 1.8e-38 156.4
Lsi09g01706 . 54 195 RAV Transcription Factor Family AT4G01500 60.3 1.0e-42 171.0
Lsi09g00114 . 50 161 RAV Transcription Factor Family AT4G01500 69.7 6.6e-42 168.3
Lsi07g00278 . 72 179 RAV Transcription Factor Family AT4G01500 65.5 4.5e-38 155.6
Lsi03g01863 . 1 156 RAV Transcription Factor Family AT2G36080 62.8 3.8e-49 191.4
Lsi09g01706 . 81 195 RAV Transcription Factor Family AT2G36080 68.6 4.5e-42 167.9
Lsi09g00114 . 49 158 RAV Transcription Factor Family AT2G36080 69.0 1.2e-39 159.8
Lsi07g00278 . 68 179 RAV Transcription Factor Family AT2G36080 69.2 2.1e-39 159.1
Lsi09g01706 . 84 195 RAV Transcription Factor Family AT5G06250 63.1 1.1e-39 160.6
Lsi09g00114 . 50 158 RAV Transcription Factor Family AT5G06250 64.7 1.9e-39 159.8
Lsi09g00114 . 49 164 RAV Transcription Factor Family AT2G46870 87.2 2.0e-56 216.5
Lsi07g00278 . 71 311 RAV Transcription Factor Family AT2G46870 54.1 6.0e-53 204.9
Lsi09g01706 . 81 322 RAV Transcription Factor Family AT2G46870 50.6 2.1e-50 196.4
Lsi04g00288 . 183 293 RAV Transcription Factor Family AT2G46870 69.6 1.7e-39 160.2
Lsi03g01863 . 35 152 RAV Transcription Factor Family AT2G46870 66.1 8.4e-39 157.9
Lsi06g01166 . 45 340 RAV Transcription Factor Family AT1G50680 52.4 9.3e-84 307.4
Lsi06g00469 . 47 357 RAV Transcription Factor Family AT1G50680 51.0 2.2e-77 286.2
Lsi07g00278 . 70 308 RAV Transcription Factor Family AT3G61970 51.0 1.7e-52 203.4
Lsi09g00114 . 48 164 RAV Transcription Factor Family AT3G61970 80.8 2.2e-52 203.0
Lsi09g01706 . 82 203 RAV Transcription Factor Family AT3G61970 76.8 4.3e-48 188.7
Lsi04g00288 . 183 293 RAV Transcription Factor Family AT3G61970 71.4 8.1e-39 157.9
Lsi04g00288 . 27 349 RAV Transcription Factor Family AT1G13260 65.0 4.8e-104 374.8
Lsi09g01022 . 29 313 RAV Transcription Factor Family AT1G13260 63.9 2.2e-93 339.3
Lsi09g00114 . 51 158 RAV Transcription Factor Family AT1G13260 71.6 7.8e-38 154.8
Lsi03g01863 . 44 153 RAV Transcription Factor Family AT1G13260 69.1 2.3e-37 153.3
Lsi09g01706 . 80 195 RAV Transcription Factor Family AT1G13260 65.0 1.5e-36 150.6
Lsi04g00288 . 1 350 RAV Transcription Factor Family AT1G68840 61.0 1.6e-110 396.4
Lsi09g01022 . 24 317 RAV Transcription Factor Family AT1G68840 60.8 3.5e-94 342.0
Lsi03g01863 . 44 169 RAV Transcription Factor Family AT1G68840 65.4 9.5e-39 157.9
Lsi09g00114 . 50 158 RAV Transcription Factor Family AT1G68840 70.3 1.6e-38 157.1
Lsi09g01706 . 84 202 RAV Transcription Factor Family AT1G68840 63.6 1.8e-37 153.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000626 3 5 4 4 3 3 5 3 3 3 3 3 6 3 3 6 3 1 4 3 3 2 3 3 3 3 2 7 4 2 103
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25602 PF02362 B3 6.90E-28 CL0405 Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi07g00278 Lsi_Chr07 FPKM 25.459789 25.406805 93.14682 89.445183 15.840655 16.454895 16.242453 2.083419 2.019324 1.896839