Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00278 ATGGATGATTTTGGTTCATCTTCTAGATTTCATCATCATCAGTACTACAACTTTGAGAGTAGCAGCAGCAACAGCAACAACAACAGAAGAAGCAGAGATTTTGATGATGATGAACAACAACAACAACAAGAAGATCAAGATCATCAAGAAATGGAAGAATGTTGTAACAACAACAAGAACAATAATAGTAACAATTGTTCTGTTTTTGTAGAGAAAGAGCATATGTTCGACAAGGTTGTAACTCCAAGCGATGTGGGAAAATTAAACCGTTTAGTTATCCCAAAACAACACGCAGAAAAGTACTTCCCACTTGATTCTTCATCCAACGAGAAAGGACTTCTCTTAAACTTTGAAGACCGATGTGGTAAGCTTTGGCGATTCCGTTACTCTTACTGGACCAGCAGCCAAAGCTATGTAATGACCAAAGGTTGGAGCCGCTTTGTCAAAGACAAAAAACTTGATGCTGGTGATATTGTCTCTTTTCAAAGACCTCTCCATCATTCTAAAGATCGTTTCTTTATTGATTGGCGTCGCCGCCCTCTTCATCCCACCCTCGATCCTCCTTTTCATTTCCACCGCCGCCCTGTTCCCGGCCAATTTCCTCCCCATTTTCACCTTAATCCACTCCCCACACCCTTATCTCTACACAGGGACCACCTCCTCCACTTGCCGCATAATAATAATCTCAATTTATTTCATAATACCTATAATCATCCTCATTATCATCATCATCATCATAATCCCGTTCTTGACGGTTCGTATGATGGGGCGTTGGTTTTCAACAATTTGAGATCCCCCACCGCACCACCCCAGATAGAGGCAGTGCCGGTTGTAGAGGATGGTAGTGGTAGTGGTGGTGGTGGTGGAAAAACGGTTGCGGCGGGTAAGACGACATTGAGGCTTTTTGGTGTCAATATGGAATGTGCAGTATCTGAAGAGTCTGGTGATGATGAATGTGATATAGCAACAACTTCAACGACAACAATGTCGTCGCCGTCGTCTCAATTCCATGTTTATGATGGAATGCCGATGCCAATGTTGATGCCGATGTCGATGCAAATGTCAACGAACAATAACAACGTATCGACGACTATGGAGTTCTTCGAGAAAGGGAAGTCGTCGATTTCGTCGTCCTTTGATTTTGGTACTTGA 1152 42.8 MDDFGSSSRFHHHQYYNFESSSSNSNNNRRSRDFDDDEQQQQQEDQDHQEMEECCNNNKNNNSNNCSVFVEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSNEKGLLLNFEDRCGKLWRFRYSYWTSSQSYVMTKGWSRFVKDKKLDAGDIVSFQRPLHHSKDRFFIDWRRRPLHPTLDPPFHFHRRPVPGQFPPHFHLNPLPTPLSLHRDHLLHLPHNNNLNLFHNTYNHPHYHHHHHNPVLDGSYDGALVFNNLRSPTAPPQIEAVPVVEDGSGSGGGGGKTVAAGKTTLRLFGVNMECAVSEESGDDECDIATTSTTTMSSPSSQFHVYDGMPMPMLMPMSMQMSTNNNNVSTTMEFFEKGKSSISSSFDFGT 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3012866 3014017 + Lsi07G002780.1 Lsi07g00278 666700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00278 383 SMART B3_2 76 180 IPR003340 GO:0003677
Lsi07g00278 383 Gene3D - 69 184 IPR015300 -
Lsi07g00278 383 SUPERFAMILY DNA-binding pseudobarrel domain 73 178 IPR015300 -
Lsi07g00278 383 MobiDBLite consensus disorder prediction 15 56 - -
Lsi07g00278 383 CDD B3_DNA 74 163 IPR003340 GO:0003677
Lsi07g00278 383 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 29 353 IPR044800 GO:0003700
Lsi07g00278 383 Pfam B3 DNA binding domain 76 179 IPR003340 GO:0003677
Lsi07g00278 383 ProSiteProfiles B3 DNA-binding domain profile. 76 180 IPR003340 GO:0003677
Lsi07g00278 383 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR NGA2 29 353 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00278 Lsi-Chr7:3012866 Lsi09g00114 Lsi-Chr9:1086117 2.00E-61 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25602 PF02362 B3 6.90E-28 CL0405 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00278 - - bhj:120090999 479.944