Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00285 ATGACGTCGGGGACGAGGCTACCAACATGGAGGGAGCGGGAGAACAACAAGAGAAGGGAGAGAAGGAGAAGAGCTATTGCGGCAAAGATCTTTGCTGGACTCAGGATGTACGGGAACTACAAGCTTCCCAAGCATTGCGACAACAATGAGGTCCTTAAAGCTCTCTGCAATGAGGCGGGATGGACCGTCGAACCTGATGGTACCACTTACCGTAAGGGATGCAAGCCAATTGAACGTATGGATGTGGTTGGTGGATCGGCAGCTGCAAGCCCGTATGCATCTCACCAACCAAGTCCTTGTGCTTCCTTCAATCCAAGCCCCGGTTCATCTTCTTTTCCAAGTCCAGCATCATCCTCATATGTTGGTAATCCGAATGCTGATGGAAGTTCACTTATCCCCTGGCTTAAAAACCTTTCAACGTCATCATCTTCGGCATCCTCGTCTAAACTCCCAAATCATTATATTCATGGAGGTTCCATCAGTGCTCCTGTAACTCCTCCTCTGAGTTCCCCAACTGCTAGAACGCCCCGACTCAAAGCTGACTGGGAAGACCAATCTGTCCTACCAGGATGGAGTGCACAATACTATTCCTCCCAGCCATCTTCTACTCCACCAAGTCCTGGGCGTCAGATTCTTCCCACTCCAGAATGGTTTGCTGGCCTTAGAATTCCTCAGGGTGGACCCAATTCTCCAACATTTAGTCTTGTTTCGACAAACCCATTTGGTTTCAAGGAAGCAGCAATGACTGGTGGAGGATCTCGCATGTGGACCCCTGGTCAAAGTGGGACCTGCTCTCCTGCCATTGCTGCAGGCTCCGATCACACTGCAGATATTCCAATGTCAGAAGTGATCTCTGACGAGTTCGCCTTTGGAAGCAATGCAGCAGGAATAGTGAAGCCATGGGAAGGAGAACGAATTCACGAGGAATGTGGTTCAGATGACCTAGAGCTCACTCTTGGAAACTCAAGGACCAGGTTTGTTGATGCAAATCACCTCTCAAACTCCTTCCATTTCAGGAATTGCTTCTCTTCCTAA 1035 49.37 MTSGTRLPTWRERENNKRRERRRRAIAAKIFAGLRMYGNYKLPKHCDNNEVLKALCNEAGWTVEPDGTTYRKGCKPIERMDVVGGSAAASPYASHQPSPCASFNPSPGSSSFPSPASSSYVGNPNADGSSLIPWLKNLSTSSSSASSSKLPNHYIHGGSISAPVTPPLSSPTARTPRLKADWEDQSVLPGWSAQYYSSQPSSTPPSPGRQILPTPEWFAGLRIPQGGPNSPTFSLVSTNPFGFKEAAMTGGGSRMWTPGQSGTCSPAIAAGSDHTADIPMSEVISDEFAFGSNAAGIVKPWEGERIHEECGSDDLELTLGNSRTRFVDANHLSNSFHFRNCFSS 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3072923 3077087 + Lsi07G002850.1 Lsi07g00285 666707

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00285 344 PANTHER BES1/BZR1 HOMOLOG PROTEIN 4 1 328 - -
Lsi07g00285 344 MobiDBLite consensus disorder prediction 1 20 - -
Lsi07g00285 344 Pfam BES1/BZR1 plant transcription factor, N-terminal 3 139 IPR008540 -
Lsi07g00285 344 MobiDBLite consensus disorder prediction 88 122 - -
Lsi07g00285 344 MobiDBLite consensus disorder prediction 91 122 - -
Lsi07g00285 344 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 1 328 IPR033264 GO:0003700|GO:0006351|GO:0009742
Lsi07g00285 344 MobiDBLite consensus disorder prediction 193 213 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00285 - - - csv:101210002 598.586
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00836 Lsi-Chr2:7840220 Lsi07g00285 Lsi-Chr7:3072923 7.47E-116 dispersed
Lsi07g00285 Lsi-Chr7:3072923 Lsi08g01414 Lsi-Chr8:22379317 2.30E-42 dispersed
Lsi07g00285 Lsi-Chr7:3072923 Lsi01g00704 Lsi-Chr1:5623250 7.29E-43 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi08g01414 . 1 310 BZR Transcription Factor Family AT1G75080 58.8 1.6e-88 323.2
Lsi01g00704 . 62 352 BZR Transcription Factor Family AT1G75080 59.1 4.7e-80 295.0
Lsi08g01414 . 1 311 BZR Transcription Factor Family AT1G19350 59.1 4.7e-88 321.6
Lsi01g00704 . 62 351 BZR Transcription Factor Family AT1G19350 59.5 3.4e-78 288.9
Lsi01g00704 . 40 347 BZR Transcription Factor Family AT3G50750 58.0 5.3e-77 284.6
Lsi08g01414 . 1 310 BZR Transcription Factor Family AT3G50750 51.8 2.5e-63 239.2
Lsi07g00285 . 77 325 BZR Transcription Factor Family AT4G18890 54.2 1.6e-49 193.0
Lsi02g00836 . 133 380 BZR Transcription Factor Family AT4G18890 53.4 5.6e-47 184.5
Lsi07g00285 . 1 325 BZR Transcription Factor Family AT1G78700 73.1 4.7e-117 417.9
Lsi02g00836 . 1 380 BZR Transcription Factor Family AT1G78700 58.3 1.9e-94 342.8
Lsi01g00704 . 62 234 BZR Transcription Factor Family AT4G36780 79.1 3.8e-64 241.9
Lsi08g01414 . 33 204 BZR Transcription Factor Family AT4G36780 62.7 3.9e-45 178.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000940 3 4 6 4 3 2 4 2 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 2 2 2 2 6 3 3 85
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25603 PF05687 BES1_N 1.50E-65 No_clan Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi07g00285 Lsi_Chr07 FPKM 115.693085 135.015823 28.082895 25.852886 10.83796 10.97727 8.013874 12.825222 10.086927 12.100391