Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00285 ATGACGTCGGGGACGAGGCTACCAACATGGAGGGAGCGGGAGAACAACAAGAGAAGGGAGAGAAGGAGAAGAGCTATTGCGGCAAAGATCTTTGCTGGACTCAGGATGTACGGGAACTACAAGCTTCCCAAGCATTGCGACAACAATGAGGTCCTTAAAGCTCTCTGCAATGAGGCGGGATGGACCGTCGAACCTGATGGTACCACTTACCGTAAGGGATGCAAGCCAATTGAACGTATGGATGTGGTTGGTGGATCGGCAGCTGCAAGCCCGTATGCATCTCACCAACCAAGTCCTTGTGCTTCCTTCAATCCAAGCCCCGGTTCATCTTCTTTTCCAAGTCCAGCATCATCCTCATATGTTGGTAATCCGAATGCTGATGGAAGTTCACTTATCCCCTGGCTTAAAAACCTTTCAACGTCATCATCTTCGGCATCCTCGTCTAAACTCCCAAATCATTATATTCATGGAGGTTCCATCAGTGCTCCTGTAACTCCTCCTCTGAGTTCCCCAACTGCTAGAACGCCCCGACTCAAAGCTGACTGGGAAGACCAATCTGTCCTACCAGGATGGAGTGCACAATACTATTCCTCCCAGCCATCTTCTACTCCACCAAGTCCTGGGCGTCAGATTCTTCCCACTCCAGAATGGTTTGCTGGCCTTAGAATTCCTCAGGGTGGACCCAATTCTCCAACATTTAGTCTTGTTTCGACAAACCCATTTGGTTTCAAGGAAGCAGCAATGACTGGTGGAGGATCTCGCATGTGGACCCCTGGTCAAAGTGGGACCTGCTCTCCTGCCATTGCTGCAGGCTCCGATCACACTGCAGATATTCCAATGTCAGAAGTGATCTCTGACGAGTTCGCCTTTGGAAGCAATGCAGCAGGAATAGTGAAGCCATGGGAAGGAGAACGAATTCACGAGGAATGTGGTTCAGATGACCTAGAGCTCACTCTTGGAAACTCAAGGACCAGGTTTGTTGATGCAAATCACCTCTCAAACTCCTTCCATTTCAGGAATTGCTTCTCTTCCTAA 1035 49.37 MTSGTRLPTWRERENNKRRERRRRAIAAKIFAGLRMYGNYKLPKHCDNNEVLKALCNEAGWTVEPDGTTYRKGCKPIERMDVVGGSAAASPYASHQPSPCASFNPSPGSSSFPSPASSSYVGNPNADGSSLIPWLKNLSTSSSSASSSKLPNHYIHGGSISAPVTPPLSSPTARTPRLKADWEDQSVLPGWSAQYYSSQPSSTPPSPGRQILPTPEWFAGLRIPQGGPNSPTFSLVSTNPFGFKEAAMTGGGSRMWTPGQSGTCSPAIAAGSDHTADIPMSEVISDEFAFGSNAAGIVKPWEGERIHEECGSDDLELTLGNSRTRFVDANHLSNSFHFRNCFSS 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3072923 3077087 + Lsi07G002850.1 Lsi07g00285 666707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00285 344 PANTHER BES1/BZR1 HOMOLOG PROTEIN 4 1 328 - -
Lsi07g00285 344 MobiDBLite consensus disorder prediction 1 20 - -
Lsi07g00285 344 Pfam BES1/BZR1 plant transcription factor, N-terminal 3 139 IPR008540 -
Lsi07g00285 344 MobiDBLite consensus disorder prediction 88 122 - -
Lsi07g00285 344 MobiDBLite consensus disorder prediction 91 122 - -
Lsi07g00285 344 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 1 328 IPR033264 GO:0003700|GO:0006351|GO:0009742
Lsi07g00285 344 MobiDBLite consensus disorder prediction 193 213 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00836 Lsi-Chr2:7840220 Lsi07g00285 Lsi-Chr7:3072923 7.47E-116 dispersed
Lsi07g00285 Lsi-Chr7:3072923 Lsi08g01414 Lsi-Chr8:22379317 2.30E-42 dispersed
Lsi07g00285 Lsi-Chr7:3072923 Lsi01g00704 Lsi-Chr1:5623250 7.29E-43 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25603 PF05687 BES1_N 1.50E-65 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00285 - - csv:101210002 598.586