Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00290 ATGAAGATTCAGTGCAACGTCTGCGAGATGGCTGAGGCGACCGTTCTGTGTTGTGCTGATGAGGCGGCGCTGTGCTGGGCCTGCGATGAGAAGATTCATGCGGCCAACAAGCTCGCAAGCAAGCACCAGAGAGTTCCTCTCTCTGGTTCTTCATCTCAGATGCCCAAATGCGACATCTGCCAGGAAGCTAGTGGCTATATCTTCTGTTTAGAGGATCGAGCATTACTTTGCAGAAAGTGTGACGTTGCTATACACACAGCAAATACTTATGTAACTGGTCATCAGCGCTTTCTACTTACTGGTGTGAAAGTGGCGCTCGAGCCAACTGATCCTGTTGCTTGTACTTCCATGGATAAGTCACATTCTCGAGTGAAGTCTACTGAGACTAAAGTTAGACCACTGTATGAAAGGGAATTCTCGATGCCTTCTCCTGGTGAACTCAGCAGAAGCTTGTCTGTACTAGGTGGACCCGAGGACTTCATGGAAAATAGAACGTTGCTTACCGGAGGCGGAGATTCTGTTTCGGGTGGCTTTTCACAGTGGCAAATGGATGAACTTATTAATCTGACTGGATTCAATCAGAACTATGGGTATATGGATAACGGATCATCCAAGGCTGATAGTGGTAAGCTTGGGGATTCTGATTCATCACCAGTTTTGAGAGCTGCTGACATCGAACTGGACGATGATAATGAATGCTCGGGTCAGGTTCCAGAGGCTTCTTGGACAGTGCCTCAGATTCCCTCTCCTCCCACAGCATCAGGCTTATACTGGCCAAGAAGTTACCATAATTCTATGGATGGTGCTGTTTTTGTTCCTGACATCTCCTGTTCTTCAGAAAAGGTTCAACATTGCTCACATAATGGTACATTCTCGAAACGAAGAAGACAGTTCTAG 897 46.82 MKIQCNVCEMAEATVLCCADEAALCWACDEKIHAANKLASKHQRVPLSGSSSQMPKCDICQEASGYIFCLEDRALLCRKCDVAIHTANTYVTGHQRFLLTGVKVALEPTDPVACTSMDKSHSRVKSTETKVRPLYEREFSMPSPGELSRSLSVLGGPEDFMENRTLLTGGGDSVSGGFSQWQMDELINLTGFNQNYGYMDNGSSKADSGKLGDSDSSPVLRAADIELDDDNECSGQVPEASWTVPQIPSPPTASGLYWPRSYHNSMDGAVFVPDISCSSEKVQHCSHNGTFSKRRRQF 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3106367 3109591 + Lsi07G002900.1 Lsi07g00290 666712

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00290 298 SMART bboxneu5 4 47 IPR000315 GO:0008270
Lsi07g00290 298 SMART bboxneu5 52 99 IPR000315 GO:0008270
Lsi07g00290 298 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Lsi07g00290 298 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Lsi07g00290 298 Gene3D Classic Zinc Finger 1 92 - -
Lsi07g00290 298 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 297 - -
Lsi07g00290 298 Pfam B-box zinc finger 4 47 IPR000315 GO:0008270
Lsi07g00290 298 Pfam B-box zinc finger 53 95 IPR000315 GO:0008270
Lsi07g00290 298 PANTHER B-BOX ZINC FINGER PROTEIN 18 1 297 - -
Lsi07g00290 298 CDD Bbox1_BBX-like 5 47 - -
Lsi07g00290 298 CDD Bbox1_BBX-like 56 99 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00290 - - - bhj:120091143 596.275
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00620 Lsi-Chr1:4986878 Lsi07g00290 Lsi-Chr7:3106367 1.02E-24 dispersed
Lsi07g00290 Lsi-Chr7:3106367 Lsi09g01848 Lsi-Chr9:27319195 2.15E-44 dispersed
Lsi07g00290 Lsi-Chr7:3106367 Lsi08g01348 Lsi-Chr8:21779307 2.55E-36 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi08g01266 . 1 337 C2C2-CO-like Transcription Factor Family AT5G24930 60.3 6.0e-81 298.1
Lsi06g01109 CCT 20 374 C2C2-CO-like Transcription Factor Family AT5G24930 50.3 1.1e-55 214.2
Lsi06g01109 CCT 5 374 C2C2-CO-like Transcription Factor Family AT5G57660 50.9 7.0e-66 248.1
Lsi08g01266 . 2 337 C2C2-CO-like Transcription Factor Family AT5G57660 51.3 4.3e-55 212.2
Lsi10g00033 . 1 416 C2C2-CO-like Transcription Factor Family AT3G07650 54.7 2.3e-91 332.8
Lsi11g01330 . 1 407 C2C2-CO-like Transcription Factor Family AT3G07650 54.5 4.7e-89 325.1
Lsi10g00033 . 1 416 C2C2-CO-like Transcription Factor Family AT5G48250 54.8 1.4e-88 323.6
Lsi11g01330 . 1 407 C2C2-CO-like Transcription Factor Family AT5G48250 55.5 3.4e-87 318.9
Lsi10g00033 . 1 416 C2C2-CO-like Transcription Factor Family AT5G48250 54.8 1.4e-88 323.6
Lsi11g01330 . 1 407 C2C2-CO-like Transcription Factor Family AT5G48250 55.5 3.4e-87 318.9
Lsi11g01136 . 1 207 C2C2-CO-like Transcription Factor Family AT1G75540 55.0 5.4e-52 201.8
Lsi07g00290 . 1 298 C2C2-CO-like Transcription Factor Family AT1G78600 50.9 6.1e-77 284.6
Lsi07g00267 CCT,ECH 1 184 C2C2-CO-like Transcription Factor Family AT2G21320 63.0 7.1e-56 213.8
Lsi01g00620 . 1 117 C2C2-CO-like Transcription Factor Family AT2G21320 76.9 4.5e-50 194.5
Lsi07g00267 CCT,ECH 1 183 C2C2-CO-like Transcription Factor Family AT4G38960 64.5 1.1e-57 219.9
Lsi01g00620 . 1 110 C2C2-CO-like Transcription Factor Family AT4G38960 80.9 1.4e-49 193.0
Lsi11g01136 . 1 197 C2C2-CO-like Transcription Factor Family AT4G39070 59.9 7.7e-56 214.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005660 1 1 3 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25604 PF00643 zf-B_box 3.60E-07 No_clan Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi07g00290 Lsi_Chr07 FPKM 120.699387 138.320786 62.521133 65.061829 12.745033 12.885954 13.047354 15.603355 17.597395 17.370199