Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi07g00290 | ATGAAGATTCAGTGCAACGTCTGCGAGATGGCTGAGGCGACCGTTCTGTGTTGTGCTGATGAGGCGGCGCTGTGCTGGGCCTGCGATGAGAAGATTCATGCGGCCAACAAGCTCGCAAGCAAGCACCAGAGAGTTCCTCTCTCTGGTTCTTCATCTCAGATGCCCAAATGCGACATCTGCCAGGAAGCTAGTGGCTATATCTTCTGTTTAGAGGATCGAGCATTACTTTGCAGAAAGTGTGACGTTGCTATACACACAGCAAATACTTATGTAACTGGTCATCAGCGCTTTCTACTTACTGGTGTGAAAGTGGCGCTCGAGCCAACTGATCCTGTTGCTTGTACTTCCATGGATAAGTCACATTCTCGAGTGAAGTCTACTGAGACTAAAGTTAGACCACTGTATGAAAGGGAATTCTCGATGCCTTCTCCTGGTGAACTCAGCAGAAGCTTGTCTGTACTAGGTGGACCCGAGGACTTCATGGAAAATAGAACGTTGCTTACCGGAGGCGGAGATTCTGTTTCGGGTGGCTTTTCACAGTGGCAAATGGATGAACTTATTAATCTGACTGGATTCAATCAGAACTATGGGTATATGGATAACGGATCATCCAAGGCTGATAGTGGTAAGCTTGGGGATTCTGATTCATCACCAGTTTTGAGAGCTGCTGACATCGAACTGGACGATGATAATGAATGCTCGGGTCAGGTTCCAGAGGCTTCTTGGACAGTGCCTCAGATTCCCTCTCCTCCCACAGCATCAGGCTTATACTGGCCAAGAAGTTACCATAATTCTATGGATGGTGCTGTTTTTGTTCCTGACATCTCCTGTTCTTCAGAAAAGGTTCAACATTGCTCACATAATGGTACATTCTCGAAACGAAGAAGACAGTTCTAG | 897 | 46.82 | MKIQCNVCEMAEATVLCCADEAALCWACDEKIHAANKLASKHQRVPLSGSSSQMPKCDICQEASGYIFCLEDRALLCRKCDVAIHTANTYVTGHQRFLLTGVKVALEPTDPVACTSMDKSHSRVKSTETKVRPLYEREFSMPSPGELSRSLSVLGGPEDFMENRTLLTGGGDSVSGGFSQWQMDELINLTGFNQNYGYMDNGSSKADSGKLGDSDSSPVLRAADIELDDDNECSGQVPEASWTVPQIPSPPTASGLYWPRSYHNSMDGAVFVPDISCSSEKVQHCSHNGTFSKRRRQF | 298 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 3106367 | 3109591 | + | Lsi07G002900.1 | Lsi07g00290 | 666712 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi07g00290 | 298 | SMART | bboxneu5 | 4 | 47 | IPR000315 | GO:0008270 | |
Lsi07g00290 | 298 | SMART | bboxneu5 | 52 | 99 | IPR000315 | GO:0008270 | |
Lsi07g00290 | 298 | ProSiteProfiles | Zinc finger B-box type profile. | 52 | 99 | IPR000315 | GO:0008270 | |
Lsi07g00290 | 298 | ProSiteProfiles | Zinc finger B-box type profile. | 1 | 47 | IPR000315 | GO:0008270 | |
Lsi07g00290 | 298 | Gene3D | Classic Zinc Finger | 1 | 92 | - | - | |
Lsi07g00290 | 298 | PANTHER | B-BOX ZINC FINGER PROTEIN 22 | 1 | 297 | - | - | |
Lsi07g00290 | 298 | Pfam | B-box zinc finger | 4 | 47 | IPR000315 | GO:0008270 | |
Lsi07g00290 | 298 | Pfam | B-box zinc finger | 53 | 95 | IPR000315 | GO:0008270 | |
Lsi07g00290 | 298 | PANTHER | B-BOX ZINC FINGER PROTEIN 18 | 1 | 297 | - | - | |
Lsi07g00290 | 298 | CDD | Bbox1_BBX-like | 5 | 47 | - | - | |
Lsi07g00290 | 298 | CDD | Bbox1_BBX-like | 56 | 99 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi01g00620 | Lsi-Chr1:4986878 | Lsi07g00290 | Lsi-Chr7:3106367 | 1.02E-24 | dispersed | |
Lsi07g00290 | Lsi-Chr7:3106367 | Lsi09g01848 | Lsi-Chr9:27319195 | 2.15E-44 | dispersed | |
Lsi07g00290 | Lsi-Chr7:3106367 | Lsi08g01348 | Lsi-Chr8:21779307 | 2.55E-36 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
25604 | PF00643 | zf-B_box | 3.60E-07 | No_clan | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi07g00290 | - | - | bhj:120091143 | 596.275 |