Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00290 ATGAAGATTCAGTGCAACGTCTGCGAGATGGCTGAGGCGACCGTTCTGTGTTGTGCTGATGAGGCGGCGCTGTGCTGGGCCTGCGATGAGAAGATTCATGCGGCCAACAAGCTCGCAAGCAAGCACCAGAGAGTTCCTCTCTCTGGTTCTTCATCTCAGATGCCCAAATGCGACATCTGCCAGGAAGCTAGTGGCTATATCTTCTGTTTAGAGGATCGAGCATTACTTTGCAGAAAGTGTGACGTTGCTATACACACAGCAAATACTTATGTAACTGGTCATCAGCGCTTTCTACTTACTGGTGTGAAAGTGGCGCTCGAGCCAACTGATCCTGTTGCTTGTACTTCCATGGATAAGTCACATTCTCGAGTGAAGTCTACTGAGACTAAAGTTAGACCACTGTATGAAAGGGAATTCTCGATGCCTTCTCCTGGTGAACTCAGCAGAAGCTTGTCTGTACTAGGTGGACCCGAGGACTTCATGGAAAATAGAACGTTGCTTACCGGAGGCGGAGATTCTGTTTCGGGTGGCTTTTCACAGTGGCAAATGGATGAACTTATTAATCTGACTGGATTCAATCAGAACTATGGGTATATGGATAACGGATCATCCAAGGCTGATAGTGGTAAGCTTGGGGATTCTGATTCATCACCAGTTTTGAGAGCTGCTGACATCGAACTGGACGATGATAATGAATGCTCGGGTCAGGTTCCAGAGGCTTCTTGGACAGTGCCTCAGATTCCCTCTCCTCCCACAGCATCAGGCTTATACTGGCCAAGAAGTTACCATAATTCTATGGATGGTGCTGTTTTTGTTCCTGACATCTCCTGTTCTTCAGAAAAGGTTCAACATTGCTCACATAATGGTACATTCTCGAAACGAAGAAGACAGTTCTAG 897 46.82 MKIQCNVCEMAEATVLCCADEAALCWACDEKIHAANKLASKHQRVPLSGSSSQMPKCDICQEASGYIFCLEDRALLCRKCDVAIHTANTYVTGHQRFLLTGVKVALEPTDPVACTSMDKSHSRVKSTETKVRPLYEREFSMPSPGELSRSLSVLGGPEDFMENRTLLTGGGDSVSGGFSQWQMDELINLTGFNQNYGYMDNGSSKADSGKLGDSDSSPVLRAADIELDDDNECSGQVPEASWTVPQIPSPPTASGLYWPRSYHNSMDGAVFVPDISCSSEKVQHCSHNGTFSKRRRQF 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3106367 3109591 + Lsi07G002900.1 Lsi07g00290 666712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00290 298 SMART bboxneu5 4 47 IPR000315 GO:0008270
Lsi07g00290 298 SMART bboxneu5 52 99 IPR000315 GO:0008270
Lsi07g00290 298 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Lsi07g00290 298 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Lsi07g00290 298 Gene3D Classic Zinc Finger 1 92 - -
Lsi07g00290 298 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 297 - -
Lsi07g00290 298 Pfam B-box zinc finger 4 47 IPR000315 GO:0008270
Lsi07g00290 298 Pfam B-box zinc finger 53 95 IPR000315 GO:0008270
Lsi07g00290 298 PANTHER B-BOX ZINC FINGER PROTEIN 18 1 297 - -
Lsi07g00290 298 CDD Bbox1_BBX-like 5 47 - -
Lsi07g00290 298 CDD Bbox1_BBX-like 56 99 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00620 Lsi-Chr1:4986878 Lsi07g00290 Lsi-Chr7:3106367 1.02E-24 dispersed
Lsi07g00290 Lsi-Chr7:3106367 Lsi09g01848 Lsi-Chr9:27319195 2.15E-44 dispersed
Lsi07g00290 Lsi-Chr7:3106367 Lsi08g01348 Lsi-Chr8:21779307 2.55E-36 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25604 PF00643 zf-B_box 3.60E-07 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00290 - - bhj:120091143 596.275