Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00293 ATGGAGTTTCCAAGTTCTCTATTCAGGATTCTCGTCTTTCTTCTTCTGTGGATTTTGCTGTTCCAGGGATTTGGATCCGACGCTCAGCTTTTGCCTGAATCCGAAGTGAAAACCCTTCAATCAATATCTTCAAAACTAAAGAATTTAAGCTGGAATGTAACCCGGAGTTCTTGCATTCGAGGTGAAGGCTTTTCCAATCAAGCTTTCCTGGGGAGCCAAATCTTGAGGAATGTCTCATGCAATTGTACTTCCACTCTTTGTCACGTGACAATTGTCCTGCTTAAGGGTCTCAATGTAACAGGAACTTTTCCAGCTGAATTTGGTAATCTTACTCATCTGCAGGAACTTGATCTTACTCGCAACCATATTGATGGCCAGCTACCCAGTAGTCTTGCCAATGCTCCTCTAATCAAACTTTCTCTCTTGGGAAACAGGCTAAACGGTTCAATTCCCAAGGAAATTGGTGACATTGGCACCCTTGAAGAGCTGGTCTTGGAAGACAACCAGCTAACTGGAAGTCTACCTGCCAGCCTTGGAAATCTGCACGGTTTGAGAAGACTGCTTCTGTCTGCAAACAATTTCACAGGAAAAATACCAGACTCATTTGGAAAATTAAAGAACTTGGTTGATTTTAGGATAGATGGGAATGGACTGTCTGGGAAGATTCCTGAATTCATTGGGAATTGGATCAACCTTGACAGACTGGATATACAAGGAACATCGATGGAAAATCCCATTCCTTCTACAATATCTCAATTGAAGAACCTGACTCAATTGAGGATATCTGACTTGAAGGGATCATTAATAGGTTTCCCCAATTTGACAGATATGATAAACATGGAAGAATTGGTCCTGAGGAACTGTTTAATTAATGGTCCAATCCCCGAGTATATTGGAGAAATTAACAAATTATCAACTCTAGTTCCTTGGTGCCTCAAGAAAGACCTTCCATGCTCTGGAGAAGCTGAATGGTCAGGCGGGTTGTCCCGTGAGATTAGTCGAGGTGCACATCATTCCTTGTTTATTAATTGTGGAGGAACTAGATTGACGGTTGATGGGCATGATTATGAAGAGGACTTAACTACAGAAGGCAAGTCAAACTTCTTTTCTGTTTCAGAAAAATGGGCTTATAGCAGTACAGGAGTTTTTTTGGGTGATGAAAATGCTGACTATTTAGCTGCAAATAAGTTTGGCCTGAATGTGAGTGGTCCACGCTATTATCAAAATGCCCGACTTTCCCCTCTCTCCCTCAAATATTATGGCCTTTGCCTGCGGAGCGGAAGCTACAATGTGAAGCTCCACTTTGCTGAAATTATGTACTCTAATGATCTAACTTTTAGCAGCCTGGGAAAGCGTATATTTGATATATCAATTCAAGGAAAATTAGTGAAGAAGGATTTCAATATTATGGAGGCAGCTGGGGGTGTTGGTAAGAATTTCACAGTGGAAGAAAAAAATGTTATTGTCAATGGCAGTACCCTTGAGATTCATCTATATTGGGCTGGTAAAGGAACCACAGCTGTACCAGACAGAGGAGTTTATGGACCCCTTATTTCTGCTATCACAGTTACACCAAGCAAGTTCTTTCTTGCACTTTTAGATGACTTTGAAATCGATGAGGGAGGACTATCAGCTGGGGCACTTGCCGGCATCATAATTTCTTCATGTGCAGTAATCATCATATTGGTCGTAGTATTTCTTTGGATGACAGGTTACATATTTAAGAAGGAAGTCCTAGATCATGAACTTTCTGGTGTAGATTTACAAACGGGTCATTTTACCTTGAAACAAATTAAAGCTGCCACCAACAACTTTGATCCTAAAAGTAAAATAGGCGAAGGTGGATTTGGGCCTGTCTACAAGGGTGTATTGTCAGATGGTGCTTTAATCGCCGTGAAGCAACTCTCCTCGAAATCGAAGCAAGGGAGCCGTGAGTTTGTTACTGAGATTGGCATGATATCTGCACTACAACACCCAAACCTCGTCAAGCTCTATGGCTGCTGCGTTGAGGGAAACCAATTGTTGCTTGTATATGAATACATGGAAAACAATAGTCTTGCCCGCGCACTTTTTGGTCGAGAGGAACAAAGGCTACACCTTGACTGGCGAACAAGGAAGAAGATATGCTTGGAGATAGCTAGGGGATTAGCTTACCTTCATGAAGAATCAAGGTTGAAGATTGTTCATAGAGACATAAAGGCAACAAATGTGCTGCTCGATAAAGATCTTAATGCTAAGATTTCTGACTTTGGTTTGGCTAAGCTTGATGAAGAGGAGAACACCCACATCAGCACACGAATTGCTGGAACCATCGGTTATATGGCACCAGAGTATGCAATGAGAGGATACTTGACTGATAAGGCAGATGTTTACAGCTTTGGAATTGTTGCCTTAGAGATAGTTAGCGGAAAAAGTAATACGAATTACAGACCGAAGGAAGAGTTTGTTTATCTTCTTGATTGGGCCTATGTACTGGAAGAGCAAGGTAACCTTCTAGAACTGGTAGATCCAGACCTTGGTTCAAATTACTCATCAGAGGAAGCAATGAGGATGCTGAACATAGCTCTCTTATGCACCAACCCATCTCCCACTCTCAGACCAACCATGTCTTCTGTGGTGAGTATGCTTGAAGGTAAGATTGCAGTCCAAGCACCGATCATCAAGCGTACTTCGTCCGGCCAAGATCCAAGATTTAGAGCATTTGAGAAGCTCTCACATGACAGTCGATCGCAGATTTCGAGCTCAACGGTTTCGCTAGATGCTGAGCCTCAAAAAAGTATGTTAATGGATGGGCCATGTAATGATTCTTCAGTGTCCATTGATACCAATGGAAATAATCTCTACCAATCTGCATCAAGTGATCCCCTCGAGAATCATCGTCGTGTGGATAATATGAAACAATCAGCTAAGTAA 2913 41.92 MEFPSSLFRILVFLLLWILLFQGFGSDAQLLPESEVKTLQSISSKLKNLSWNVTRSSCIRGEGFSNQAFLGSQILRNVSCNCTSTLCHVTIVLLKGLNVTGTFPAEFGNLTHLQELDLTRNHIDGQLPSSLANAPLIKLSLLGNRLNGSIPKEIGDIGTLEELVLEDNQLTGSLPASLGNLHGLRRLLLSANNFTGKIPDSFGKLKNLVDFRIDGNGLSGKIPEFIGNWINLDRLDIQGTSMENPIPSTISQLKNLTQLRISDLKGSLIGFPNLTDMINMEELVLRNCLINGPIPEYIGEINKLSTLVPWCLKKDLPCSGEAEWSGGLSREISRGAHHSLFINCGGTRLTVDGHDYEEDLTTEGKSNFFSVSEKWAYSSTGVFLGDENADYLAANKFGLNVSGPRYYQNARLSPLSLKYYGLCLRSGSYNVKLHFAEIMYSNDLTFSSLGKRIFDISIQGKLVKKDFNIMEAAGGVGKNFTVEEKNVIVNGSTLEIHLYWAGKGTTAVPDRGVYGPLISAITVTPSKFFLALLDDFEIDEGGLSAGALAGIIISSCAVIIILVVVFLWMTGYIFKKEVLDHELSGVDLQTGHFTLKQIKAATNNFDPKSKIGEGGFGPVYKGVLSDGALIAVKQLSSKSKQGSREFVTEIGMISALQHPNLVKLYGCCVEGNQLLLVYEYMENNSLARALFGREEQRLHLDWRTRKKICLEIARGLAYLHEESRLKIVHRDIKATNVLLDKDLNAKISDFGLAKLDEEENTHISTRIAGTIGYMAPEYAMRGYLTDKADVYSFGIVALEIVSGKSNTNYRPKEEFVYLLDWAYVLEEQGNLLELVDPDLGSNYSSEEAMRMLNIALLCTNPSPTLRPTMSSVVSMLEGKIAVQAPIIKRTSSGQDPRFRAFEKLSHDSRSQISSSTVSLDAEPQKSMLMDGPCNDSSVSIDTNGNNLYQSASSDPLENHRRVDNMKQSAK 970
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3155917 3168866 + Lsi07G002930.1 Lsi07g00293 666715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00293 970 MobiDBLite consensus disorder prediction 904 970 - -
Lsi07g00293 970 Pfam Malectin domain 340 521 IPR021720 -
Lsi07g00293 970 ProSitePatterns Serine/Threonine protein kinases active-site signature. 727 739 IPR008271 GO:0004672|GO:0006468
Lsi07g00293 970 Pfam Protein tyrosine and serine/threonine kinase 608 875 IPR001245 GO:0004672|GO:0006468
Lsi07g00293 970 CDD STKc_IRAK 611 878 - -
Lsi07g00293 970 PANTHER - 304 926 - -
Lsi07g00293 970 PANTHER - 67 297 - -
Lsi07g00293 970 Gene3D Ribonuclease Inhibitor 31 309 IPR032675 -
Lsi07g00293 970 MobiDBLite consensus disorder prediction 930 955 - -
Lsi07g00293 970 SUPERFAMILY L domain-like 75 307 - -
Lsi07g00293 970 Gene3D Phosphorylase Kinase; domain 1 573 680 - -
Lsi07g00293 970 MobiDBLite consensus disorder prediction 956 970 - -
Lsi07g00293 970 MobiDBLite consensus disorder prediction 907 922 - -
Lsi07g00293 970 SUPERFAMILY Protein kinase-like (PK-like) 588 888 IPR011009 -
Lsi07g00293 970 Gene3D Transferase(Phosphotransferase) domain 1 681 888 - -
Lsi07g00293 970 Pfam Leucine rich repeat 159 218 IPR001611 GO:0005515
Lsi07g00293 970 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 304 926 - -
Lsi07g00293 970 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 67 297 - -
Lsi07g00293 970 Gene3D - 337 527 - -
Lsi07g00293 970 ProSiteProfiles Protein kinase domain profile. 605 887 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi07g00293 970 SMART serkin_6 605 874 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01987 Lsi-Chr4:26970268 Lsi07g00293 Lsi-Chr7:3155917 0 dispersed
Lsi04g01989 Lsi-Chr4:26990911 Lsi07g00293 Lsi-Chr7:3155917 0 dispersed
Lsi04g01990 Lsi-Chr4:27014043 Lsi07g00293 Lsi-Chr7:3155917 5.39E-98 dispersed
Lsi04g01991 Lsi-Chr4:27020878 Lsi07g00293 Lsi-Chr7:3155917 0 dispersed
Lsi07g00293 Lsi-Chr7:3155917 Lsi11g01653 Lsi-Chr11:24830084 0 dispersed
Lsi07g00871 Lsi-Chr7:9878677 Lsi07g00293 Lsi-Chr7:3155917 9.63E-99 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83766 PF07714 PK_Tyr_Ser-Thr 7.50E-50 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00293 - - csv:101211151 1372.84