Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00304 ATGAGTCCAGCAAATTGTTTTTGGACAATATTCAAGCAACGGAAGGTGAAACATGTTACAAGCAATGGAGAACAGGTACACGTAAAGACAGGAAAATCCAATGGTTTCCCTAGTGGAAAGAGTGAAGATCTAGCTGCAACTCGAATTCAAAATGCATTTCGCGCATTTACGGCCAGAAAGTATGTACATAATCCGAAAGTGCCAGAGAGATGCCAGGATCTAATTCAAGGTGAAACGGCTACAAAACAAGTGATGAGCTTCATTCATTCATGGAGCAGAATGCAGCAAGAAATTAGAGCACGTAGACTCTGCATGGTCACAGAGTATCGAGTCAAGCAAAAGAAACTGGAAAATCAGCTGAAGCTTGAGGCTAAAATTCATGAACTTGAGGTAAAATGGTGCGGTGGGTCAGAGACAAAGGAGGAAATACTTTTCAAGATTCAGCAACGAGAAGAAGCTGCTGTTAGACGGGAGCGGGCTATGGCTTATGCATTCTCTCACCAGTGGAGGGCCAATTCCATCTTAGATCTGAGCCTGGCTTCATACAGCCTTGACAAAGAAAACTGGGGATGGAGCTGGAAGGAGAGATGGATTGCTGCTCGGCCATGGGAGATCCGAGCTAATACTCATCCCACCATTCCAAAGAAGGTGCAGACGAAGCAAACAAACAAAATCAATAAAGTGACATATCAATCAGGGTCGAAGGTCTCAAACTTAGCCAGACATTCTTCGTTGAACAGCAAGGGGAGTTCAAAGGCCAGAAATTCTGCTATACCCAACTGCTGA 786 44.27 MSPANCFWTIFKQRKVKHVTSNGEQVHVKTGKSNGFPSGKSEDLAATRIQNAFRAFTARKYVHNPKVPERCQDLIQGETATKQVMSFIHSWSRMQQEIRARRLCMVTEYRVKQKKLENQLKLEAKIHELEVKWCGGSETKEEILFKIQQREEAAVRRERAMAYAFSHQWRANSILDLSLASYSLDKENWGWSWKERWIAARPWEIRANTHPTIPKKVQTKQTNKINKVTYQSGSKVSNLARHSSLNSKGSSKARNSAIPNC 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3259617 3267069 - Lsi07G003040.1 Lsi07g00304 666726

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00304 261 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 20 242 - -
Lsi07g00304 261 ProSiteProfiles IQ motif profile. 42 70 IPR000048 GO:0005515
Lsi07g00304 261 MobiDBLite consensus disorder prediction 241 261 - -
Lsi07g00304 261 Coils Coil 112 132 - -
Lsi07g00304 261 PANTHER IQ-DOMAIN 5-RELATED 20 242 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00304 - - - csv:101206595 469.544
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00265 Lsi-Chr1:2367995 Lsi07g00304 Lsi-Chr7:3259617 8.06E-73 dispersed
Lsi04g01418 Lsi-Chr4:21947617 Lsi07g00304 Lsi-Chr7:3259617 5.45E-28 dispersed
Lsi06g00645 Lsi-Chr6:9554658 Lsi07g00304 Lsi-Chr7:3259617 1.60E-39 dispersed
Lsi07g00304 Lsi-Chr7:3259617 Lsi01g01363 Lsi-Chr1:11818135 6.22E-18 dispersed
Lsi07g00304 Lsi-Chr7:3259617 Lsi03g02046 Lsi-Chr3:31790437 7.20E-25 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi06g00645 . 23 430 IQD Protein Family AT3G22190 58.0 7.0e-97 351.3
Lsi04g01418 . 1 438 IQD Protein Family AT2G26180 61.1 3.8e-119 425.2
Lsi01g00265 . 61 334 IQD Protein Family AT2G33990 51.8 1.7e-61 233.0
Lsi07g00304 . 40 215 IQD Protein Family AT2G33990 55.9 2.0e-49 193.0
Lsi01g00265 . 61 282 IQD Protein Family AT3G15050 50.5 1.1e-55 213.8
Lsi07g00304 . 43 216 IQD Protein Family AT3G15050 62.7 5.3e-55 211.5
Lsi09g00803 . 124 471 IQD Protein Family AT5G13460 50.4 1.2e-75 280.8
Lsi06g00223 . 1 391 IQD Protein Family AT3G16490 51.0 2.9e-65 246.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011558 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 0 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi07g00304 Lsi_Chr07 FPKM 2.273713 1.555856 0.244046 0.857722 0.574733 2.680764 1.06687 8.040008 8.568114 8.229555