Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi07g00304 | ATGAGTCCAGCAAATTGTTTTTGGACAATATTCAAGCAACGGAAGGTGAAACATGTTACAAGCAATGGAGAACAGGTACACGTAAAGACAGGAAAATCCAATGGTTTCCCTAGTGGAAAGAGTGAAGATCTAGCTGCAACTCGAATTCAAAATGCATTTCGCGCATTTACGGCCAGAAAGTATGTACATAATCCGAAAGTGCCAGAGAGATGCCAGGATCTAATTCAAGGTGAAACGGCTACAAAACAAGTGATGAGCTTCATTCATTCATGGAGCAGAATGCAGCAAGAAATTAGAGCACGTAGACTCTGCATGGTCACAGAGTATCGAGTCAAGCAAAAGAAACTGGAAAATCAGCTGAAGCTTGAGGCTAAAATTCATGAACTTGAGGTAAAATGGTGCGGTGGGTCAGAGACAAAGGAGGAAATACTTTTCAAGATTCAGCAACGAGAAGAAGCTGCTGTTAGACGGGAGCGGGCTATGGCTTATGCATTCTCTCACCAGTGGAGGGCCAATTCCATCTTAGATCTGAGCCTGGCTTCATACAGCCTTGACAAAGAAAACTGGGGATGGAGCTGGAAGGAGAGATGGATTGCTGCTCGGCCATGGGAGATCCGAGCTAATACTCATCCCACCATTCCAAAGAAGGTGCAGACGAAGCAAACAAACAAAATCAATAAAGTGACATATCAATCAGGGTCGAAGGTCTCAAACTTAGCCAGACATTCTTCGTTGAACAGCAAGGGGAGTTCAAAGGCCAGAAATTCTGCTATACCCAACTGCTGA | 786 | 44.27 | MSPANCFWTIFKQRKVKHVTSNGEQVHVKTGKSNGFPSGKSEDLAATRIQNAFRAFTARKYVHNPKVPERCQDLIQGETATKQVMSFIHSWSRMQQEIRARRLCMVTEYRVKQKKLENQLKLEAKIHELEVKWCGGSETKEEILFKIQQREEAAVRRERAMAYAFSHQWRANSILDLSLASYSLDKENWGWSWKERWIAARPWEIRANTHPTIPKKVQTKQTNKINKVTYQSGSKVSNLARHSSLNSKGSSKARNSAIPNC | 261 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 3259617 | 3267069 | - | Lsi07G003040.1 | Lsi07g00304 | 666726 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi07g00304 | 261 | PANTHER | BINDING PROTEIN, PUTATIVE-RELATED | 20 | 242 | - | - | |
| Lsi07g00304 | 261 | ProSiteProfiles | IQ motif profile. | 42 | 70 | IPR000048 | GO:0005515 | |
| Lsi07g00304 | 261 | MobiDBLite | consensus disorder prediction | 241 | 261 | - | - | |
| Lsi07g00304 | 261 | Coils | Coil | 112 | 132 | - | - | |
| Lsi07g00304 | 261 | PANTHER | IQ-DOMAIN 5-RELATED | 20 | 242 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi01g00265 | Lsi-Chr1:2367995 | Lsi07g00304 | Lsi-Chr7:3259617 | 8.06E-73 | dispersed | |
| Lsi04g01418 | Lsi-Chr4:21947617 | Lsi07g00304 | Lsi-Chr7:3259617 | 5.45E-28 | dispersed | |
| Lsi06g00645 | Lsi-Chr6:9554658 | Lsi07g00304 | Lsi-Chr7:3259617 | 1.60E-39 | dispersed | |
| Lsi07g00304 | Lsi-Chr7:3259617 | Lsi01g01363 | Lsi-Chr1:11818135 | 6.22E-18 | dispersed | |
| Lsi07g00304 | Lsi-Chr7:3259617 | Lsi03g02046 | Lsi-Chr3:31790437 | 7.20E-25 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi07g00304 | - | - | csv:101206595 | 469.544 |