Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00322 ATGGGATCTTTGGTGAGCGATGAGGAAGCCCAGCTGTTCGCTATGCAACTGGCTAGCGCCTCCGTCCTTCCGATGGTGCTGAAGGCGGCGATTGAGCTGGACGTGCTGGAGATCATTGGAAGGGGTGGAGAGGGGGCCGTGTTATCCCCCTCACAAATCGCTTCCCAGCTGTCAGGGGCTAAAAACCCCGAGGCCCACGTGATGCTGGACCGCATGTTGCGCCTGCTGGCTAGCTACTCTATCCTAACTTACTCCCTCAATCCCCTCCCCGATGGCTCCGTGGAGAGGCTCTACGGACTGGCCCCTGTCTCGAAGTTCTTGATCAAGAATCAAGATGGCGTCTCTATTGCTCCTCTTTGTCTCATGAATCAGGACAAGGTCCTGATGGAGAGCTGGTACCATTTGAAAGATGCAGTGCTTGAAGGTGGGATTCCGTTCAACAAAGCGTATGGAATGAGTGCGTTCGAATACCATGGAACAGATCCGAGATTCAACAAGGTGTTCAACAGGGGAATGTCGGAGCATTCTACCATTACCATGAAGAAGATTCTGGAGACGTATAAAGGGTTTGGAGGGCTTAATTCAGTGGTGGATGTGGGAGGTGGCACTGGAGCCGTTCTCAACATGATAGTTTCCAAGTACCCTTCTATTAAGGGCATCAACTTCGACCTCCCTCATGTCATTCAGGATGCCCCTGCCTACCCAGGCGTCGACCATGTTGGGGGCGACATGTTTGACAGCGTTCCAAAGGGGGATGCCATTTTCATGAAGTGGATCTGCCACGATTGGAGCGACCAGCACTGCCTCAAATTCTTGAAGAATTGCTACGATGCGCTGCCGGAGCACGGCAAGGTGATCGTTGCTGAATGCATTCTTCCTGTAGCACCGGACAGCAGCCTCGCCACGAAGGGAGTCATTCACATCGACCTCATAATGCTGGCTCACAACCCCGGAGGCAAAGAAAGAACCGAGAAGGAGTTTGAAGCCTTGTCTAAGGCGGCTGGATTTCATGGTTTCAAAGTCCACTGTTGTGCTTTTAACACTTATGTCATGGAATTTCTCAAGACACCTTAG 1074 52.05 MGSLVSDEEAQLFAMQLASASVLPMVLKAAIELDVLEIIGRGGEGAVLSPSQIASQLSGAKNPEAHVMLDRMLRLLASYSILTYSLNPLPDGSVERLYGLAPVSKFLIKNQDGVSIAPLCLMNQDKVLMESWYHLKDAVLEGGIPFNKAYGMSAFEYHGTDPRFNKVFNRGMSEHSTITMKKILETYKGFGGLNSVVDVGGGTGAVLNMIVSKYPSIKGINFDLPHVIQDAPAYPGVDHVGGDMFDSVPKGDAIFMKWICHDWSDQHCLKFLKNCYDALPEHGKVIVAECILPVAPDSSLATKGVIHIDLIMLAHNPGGKERTEKEFEALSKAAGFHGFKVHCCAFNTYVMEFLKTP 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3432809 3434833 - Lsi07G003220.1 Lsi07g00322 666744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00322 357 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 112 353 IPR029063 -
Lsi07g00322 357 CDD AdoMet_MTases 196 287 - -
Lsi07g00322 357 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 15 355 IPR016461 GO:0008168
Lsi07g00322 357 PIRSF O-mtase 2 355 IPR016461 GO:0008168
Lsi07g00322 357 PANTHER BNAA10G07270D PROTEIN 5 355 - -
Lsi07g00322 357 Gene3D - 3 107 IPR036388 -
Lsi07g00322 357 Pfam Dimerisation domain 25 77 IPR012967 GO:0046983
Lsi07g00322 357 SUPERFAMILY Winged helix DNA-binding domain 7 110 IPR036390 -
Lsi07g00322 357 Gene3D Vaccinia Virus protein VP39 108 355 IPR029063 -
Lsi07g00322 357 PANTHER O-METHYLTRANSFERASE 5 355 IPR016461 GO:0008168
Lsi07g00322 357 Pfam O-methyltransferase domain 132 336 IPR001077 GO:0008171
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01967 Lsi-Chr3:31090605 Lsi07g00322 Lsi-Chr7:3432809 4.13E-80 dispersed
Lsi07g00322 Lsi-Chr7:3432809 Lsi07g01453 Lsi-Chr7:21105962 3.49E-145 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00322 K13066 - csv:101204109 676.011