Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi07g00339 | ATGGACGTAGAAACGATGATGGAACCGAAGAGGAGTCTATGCTCTGTTGATGAGAGCGCTCTCACTTCTCTTACATCCAAGCGACACAAGACTGATTTCTCTATCTCCTCTAAGGAGAGGAAAGACAAACTGGGTGAACGAATTATGGCCTTGCAACAACTTGTTTCACCATACGGAAAGACAGATACGGCATCTGTTCTTCTGGAGGCAATGGAATATATCCAATTCCTTCACGAGCAAGTCAAGGTGTTGAGTGCTCCATATCTCCAAAGCACACCCACTGTTTTGTTGCAGGAGCTGGAGCCATGCAGCCATAGCCTGAGGAGCAGAGGTCTATGTCTTGTTCCAATCTCGTGTACTGCCGGAGTTGCACGCAGCAACGGTGCAGATATTTGGGCTCCTGTGAAGACAGTTTCCCCCAAATTTGAGAAGCCTATCTCACCATTCAATTGA | 453 | 47.24 | MDVETMMEPKRSLCSVDESALTSLTSKRHKTDFSISSKERKDKLGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQELEPCSHSLRSRGLCLVPISCTAGVARSNGADIWAPVKTVSPKFEKPISPFN | 150 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 3579414 | 3583514 | - | Lsi07G003390.1 | Lsi07g00339 | 666761 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi07g00339 | 150 | Gene3D | - | 25 | 94 | IPR036638 | GO:0046983 | |
| Lsi07g00339 | 150 | CDD | bHLH_AtbHLH_like | 34 | 85 | IPR045239 | - | |
| Lsi07g00339 | 150 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 30 | 91 | IPR036638 | GO:0046983 | |
| Lsi07g00339 | 150 | SMART | finulus | 36 | 83 | IPR011598 | GO:0046983 | |
| Lsi07g00339 | 150 | PANTHER | TRANSCRIPTION FACTOR BHLH113-LIKE ISOFORM X1 | 2 | 134 | - | - | |
| Lsi07g00339 | 150 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 2 | 134 | - | - | |
| Lsi07g00339 | 150 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 28 | 77 | IPR011598 | GO:0046983 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi01g00645 | Lsi-Chr1:5206282 | Lsi07g00339 | Lsi-Chr7:3579414 | 1.04E-28 | dispersed | |
| Lsi03g00549 | Lsi-Chr3:6659554 | Lsi07g00339 | Lsi-Chr7:3579414 | 4.84E-34 | dispersed | |
| Lsi04g01698 | Lsi-Chr4:24360908 | Lsi07g00339 | Lsi-Chr7:3579414 | 2.49E-26 | dispersed | |
| Lsi05g00643 | Lsi-Chr5:8098073 | Lsi07g00339 | Lsi-Chr7:3579414 | 3.95E-20 | dispersed | |
| Lsi07g00339 | Lsi-Chr7:3579414 | Lsi11g00036 | Lsi-Chr11:372772 | 2.06E-24 | dispersed | |
| Lsi07g00339 | Lsi-Chr7:3579414 | Lsi01g00375 | Lsi-Chr1:3301013 | 2.09E-31 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi07g00339 | - | - | cmo:103494587 | 286.574 |