Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00382 ATGTTGGTGAGAATCAACACCCTCCTTCAAGGCTACTCTGACATTAGATTCGATATTTTAGAAGCCATTGCTAATCTCTTGAACCACAACGTCACTCCATGTTTGCCACTTAGAGGAACAATTACAGCTTCTGGAGATTTGGTTCCTTTGTCTTATATTGCAGGGTTGCTCACTGGTCGTCACAATTCGAAAGCTATCGGACCCGATGGAAAACCCCTTGATGCAAAGGTTGCTTTTGAACAAGCTGGTATTGATTCTGGGTTCTTTGAGTTGCAGCCTAAGGAAGGTCTTGCTCTTGTCAATGGCACTGTTGTCGGTTCTGGGTTGGCTTCCATTGTTCTCTTCGAGGCAAATATTTTGGTTGTTTTGTCCGAAATTCTATCTGCCATTTTTGCTGAGGTGATGCAAGGAAAGCCCGAATTCACCGACCATTTGACCCATAAGTTGAAGTACCACCCTGGCCAGATTGAAGCAGCTGCAATCATGGAGCACATTTTAGATGGAAGCTCCTACATGAAAACAGCAAAGAAACTGCATGAAATGGACCCTCTCCAAAAGCCCAAACAAGATCGTTATGCTCTTCGAACTTCTCCCCAATGGTTGGGTCCCTTGATTGAAGTGATCCGTTTCTCCACCAAGTCGATCGAGCGAGAGATTAATTCAGTCAACGACAACCCTTTGATTGATGTTTCAAGAAACAAGGCATTGCATGGAGGTAACTTCCAAGGAACGCCGATTGGAGTTTCCATGGACAACACTCGTTTGGCCATTGCATCGATTGGAAAGCTCATGTTTGCCCAATTTTCAGAATTAGTCAACGATTTTTACAATAACGGTTTGCCTTCTAATCTTTCTGCAAGTAGAAACCCCAGTTTGGATTATGGATTTAAAGTGACAAGTCATGTTCAAAGCGCTGAGCAACACAACCAAGATGTTAACTCTCTTGGTTTAATTTCTTCAAGGAAAACAGCTGAAGCCATTGATATTCTCAAACTCATGTCTTCCACATTTTTAGTTGCTCTTTGTCAAGCAATTGACTTAAGGCACTTGGAGGAAAACTTGAAGAGCACCGTAAAAAATACAGTTAGCCAAGTAGCTAAAAAAGTGTTGACTACATCCTTTAGTGGCGCACTTCACCCATCAAGATTTTGTGAGAAAGATTTACTCAAAGTTGTTGACAGAGAATACACTTTTGCATACATCGATGATCCATGCAGTGCTACTTACCCACTTATGCAAAAGCTAAGACAAATTCTCGTTGAGCGTGCACTTGAAAATGGTGATAATGAAGTGAATGCAAACACTTCAATCTTCCAAAAGATTGGTGCTTTTGAAGAGGAATTAAAGGCAATTTTATCGAAAGAGGTTGAAAACGTAAGGCTTGCATATGAGAGTGGAAACTCTAAAATTGAAAATCAGATCAAGGATTGCAGATCCTACCCATTATACAGATTTGTGAGAGAGGAGTTGGGAACAAAATTGCTAACCGGCGAAATTGTGATATCTCCAGGAGAAGAGTGCGAGAAGGTATTCACAGCTTTATGTCAAGGAAAAATGATCGACTCTATCTTTGAATGCTTGAAGGAGTGGAATGGAGCACCCATCCCTATTTGCTAA 1617 41.31 MLVRINTLLQGYSDIRFDILEAIANLLNHNVTPCLPLRGTITASGDLVPLSYIAGLLTGRHNSKAIGPDGKPLDAKVAFEQAGIDSGFFELQPKEGLALVNGTVVGSGLASIVLFEANILVVLSEILSAIFAEVMQGKPEFTDHLTHKLKYHPGQIEAAAIMEHILDGSSYMKTAKKLHEMDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKVTSHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLVALCQAIDLRHLEENLKSTVKNTVSQVAKKVLTTSFSGALHPSRFCEKDLLKVVDREYTFAYIDDPCSATYPLMQKLRQILVERALENGDNEVNANTSIFQKIGAFEEELKAILSKEVENVRLAYESGNSKIENQIKDCRSYPLYRFVREELGTKLLTGEIVISPGEECEKVFTALCQGKMIDSIFECLKEWNGAPIPIC 538
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4109383 4111056 - Lsi07G003820.1 Lsi07g00382 666804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00382 538 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 39 55 IPR022313 GO:0016841
Lsi07g00382 538 Pfam Aromatic amino acid lyase 1 360 IPR001106 -
Lsi07g00382 538 Gene3D - 1 103 IPR024083 -
Lsi07g00382 538 CDD PAL-HAL 1 348 IPR001106 -
Lsi07g00382 538 Gene3D Fumarase/aspartase (Central domain) 299 533 - -
Lsi07g00382 538 SUPERFAMILY L-aspartase-like 1 538 IPR008948 GO:0003824
Lsi07g00382 538 Gene3D - 351 472 IPR023144 -
Lsi07g00382 538 PANTHER PHENYLALANINE AMMONIA-LYASE 1 538 - -
Lsi07g00382 538 Gene3D Fumarase/aspartase (Central domain) 105 297 - -
Lsi07g00382 538 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 1 528 IPR005922 GO:0005737|GO:0006559|GO:0016841
Lsi07g00382 538 PANTHER HISTIDINE AMMONIA-LYASE 1 538 IPR001106 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00382 Lsi-Chr7:4109383 Lsi07g00385 Lsi-Chr7:4121676 0 dispersed
Lsi07g00382 Lsi-Chr7:4109383 Lsi07g00384 Lsi-Chr7:4114890 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00382 K10775 - csv:116401606 999.964