Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00383 ATGCCCCGAAAGGTTTTTGCTCATCAAAATGGTTCAATGGGGAGCTTGTGCAACACCCTTCAAGATCCACTCAACTGGGGTATGGCAGCTGAGTCCATGAAGGGAAGTCATTTGGATGAGGTGAAGCGAATGGTCGAAGAGTATCGGATGCCTTCGGTGAAGCTTGGAGGACAAACTCTCACCATTTCTCAAGTTGCTGCCATTGCTACTCGTGACAACGATGTCATCGTAGAATTGGCTGAGTCTGCGAGGGCTGGTGTCAAAGCTAGCAGCGACTGGGTCATGGAAAGCATGAGCAAAGGTACTGACAGCTATGGTGTCACTACTAGATTTGGTGCCACTTCTCATAGAAGAACCAATCAAGGTGGAGCTCTTCAAAAGGAGCTTATTCGATTCTTGAATTCTGGCATATTTGGGAGCGGTGCTGAGTAG 432 48.15 MPRKVFAHQNGSMGSLCNTLQDPLNWGMAAESMKGSHLDEVKRMVEEYRMPSVKLGGQTLTISQVAAIATRDNDVIVELAESARAGVKASSDWVMESMSKGTDSYGVTTRFGATSHRRTNQGGALQKELIRFLNSGIFGSGAE 143
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4111093 4111524 - Lsi07G003830.1 Lsi07g00383 666805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00383 143 PANTHER PHENYLALANINE AMMONIA-LYASE 2 18 140 - -
Lsi07g00383 143 SUPERFAMILY L-aspartase-like 22 139 IPR008948 GO:0003824
Lsi07g00383 143 Pfam Aromatic amino acid lyase 60 137 IPR001106 -
Lsi07g00383 143 Gene3D - 13 143 IPR024083 -
Lsi07g00383 143 PANTHER HISTIDINE AMMONIA-LYASE 18 140 IPR001106 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00383 Lsi-Chr7:4111093 Lsi07g00385 Lsi-Chr7:4121676 2.16E-86 dispersed
Lsi07g00383 Lsi-Chr7:4111093 Lsi07g00384 Lsi-Chr7:4114890 2.27E-83 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00383 K10775 - csv:101204574 251.906