Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00384 ATGGCTCACCAAAATGGTTCTTTAGAGAGCTTGTGCACCAGCTCTCAGGATCCACTCAACTGGGGTGTGGCTGCTGAGTCCATGACTGGAAGTCATTTGGATGAGGTCAAGCAGATGGTCGAAGAGTATCGGATGCCTTTCGTGAAGCTTGGAGGACAGACTCTCACCATTTCTCAAGTTGCTGCTATTGCCACTCGTGATAACGATGTCGTCGTAGAATTGGCTGAATCTGCGAGGGCTGGTGTTAAAGCTAGCAGTGATTGGGTCATGGACAGCATGGGCAAAGGTACTGATAGTTATGGTGTCACTACTGGTTTTGGTGCCACTTCACATAGAAGAACTAATCAAGGTGGAGCTCTTCAGAAGGAGTTGATCCGATTCTTGAATTCTGGTATCTTTGGGAGTGGTAGCGAGTCGAGTCACACTTTGCCTCACTCTGCCACGAGAGCAGCCATGTTGGTGAGAATCAACACTCTCCTTCAAGGCTATTCTGGTATCCGATTCGAGATTTTGGAAGCCATTGCTAATCTCTTGAACCACAATGTCACTCCATGTTTGCCACTTCGAGGAACAATTACAGCTTCTGGAGATTTGGTTCCTCTGTCTTATATTGCAGGGTTGCTCACCGGTCGTCACAATTCGAAAGCTATCGGACCTAATGGAGAAGTCCTTGATGCACAGGCTGCTTTTGAACAAGCCGGTATTGATTCTGGGTTCTTTGAGTTGCAGCCTAAGGAAGGTCTTGCTCTTGTCAATGGCACCGCTGTCGGTTCTGGGTTGGCTTCCATTGTTCTCTTCGAGGCAAATATTTTGGCTATTTTATCTGAAATTCTATCTGCTATTTTTGCTGAGGTGATGCAAGGAAAACCTGAATTCACCGACCATTTGACCCATAAGTTGAAGCACCACCCTGGCCAAATTGAAGCAGCTGCAATCATGGAGCACATTTTAGATGGAAGCTCCTACATGAAAACAGCAAAGAAACTGCATGAAATGGACCCTCTCCAAAAGCCCAAACAAGATCGTTATGCTCTTCGAACTTCTCCCCAATGGTTGGGTCCCTTGATTGAAGTGATCCGTTTCTCCACCAAGTCGATCGAGCGAGAGATTAATTCAGTCAACGACAACCCTTTGATTGATGTTTCAAGAAACAAGGCATTACATGGAGGCAATTTCCAAGGAACACCAATTGGAGTTTCCATGGATAACACTCGTTTGGCCGTTGCATCGATTGGAAAGCTCATGTTTGCCCAATTTTCAGAACTCGTCAATGATTTCTACAATAACGGTTTGCCTTCTAATCTTTCTGCAAGTAGAAACCCCAGCTTGGATTATGGATTCAAAGGTGCTGAGATTGCCATGGCCTCATACTGCTCTGAGCTTCAATATCTTGCAAATCCAGTGACGAGTCATGTTCAGAGCGCTGAGCAACACAACCAAGATGTTAACTCTCTTGGTTTAATTTCTTCAAGGAAAACTGCTGAAGCCATTGATATTCTCAAACTCATGTCTTCCACATTTCTAGTTGCTCTTTGTCAGGCAATTGATTTGAGGCATTTGGAGGAAAACTTGAAGAGCACTGTCAAAAACACGGTTAGCCAAGTAGCAAAAAAAGTGTTGACTACATGCTCTACTGGCGCACTTCACCCATCAAGATTTTGTGAGAAAGATCTACTCAAAGTTGTTGATAGAGAATACACTTTTGCTTACATTGATGATCCATGCAGTGCTACATACCCACTGATGCAAAAGCTAAGGCAAATTCTCGTTGAGCATGCACTTGAAAATGGTGATAATGAAGTGAACGCACACACTTCAATCTTCCAAAAGATTGGTGCTTTTGAAGAGGAATTAAAGGCAGTCTTACCGAAAGAGGTTGAAAATGTAAGGCTGGCATATGAGAGTGGAAATTCTAAAATTGAAAATCAGATAAAGGATTGTAGATCCTACCCGTTATACAAATTTGTGAGAGAGGAGTTGGGAACAAAATTGTTAACCGGTGAAAAGGTGATATCTCCAGGAGAAGAGTGCGAGAAGGTATTCACGGCTTTATGTCAAGGAAAAATGATCGACTCTATCTTCGAATGCTTGAAGGAGTGGAATGGAGCACCGATCCCTATTTATTAA 2127 43.58 MAHQNGSLESLCTSSQDPLNWGVAAESMTGSHLDEVKQMVEEYRMPFVKLGGQTLTISQVAAIATRDNDVVVELAESARAGVKASSDWVMDSMGKGTDSYGVTTGFGATSHRRTNQGGALQKELIRFLNSGIFGSGSESSHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAIANLLNHNVTPCLPLRGTITASGDLVPLSYIAGLLTGRHNSKAIGPNGEVLDAQAAFEQAGIDSGFFELQPKEGLALVNGTAVGSGLASIVLFEANILAILSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKTAKKLHEMDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAVASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLVALCQAIDLRHLEENLKSTVKNTVSQVAKKVLTTCSTGALHPSRFCEKDLLKVVDREYTFAYIDDPCSATYPLMQKLRQILVEHALENGDNEVNAHTSIFQKIGAFEEELKAVLPKEVENVRLAYESGNSKIENQIKDCRSYPLYKFVREELGTKLLTGEKVISPGEECEKVFTALCQGKMIDSIFECLKEWNGAPIPIY 708
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4114890 4117016 - Lsi07G003840.1 Lsi07g00384 666806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00384 708 Gene3D - 9 254 IPR024083 -
Lsi07g00384 708 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 190 206 IPR022313 GO:0016841
Lsi07g00384 708 CDD PAL-HAL 53 518 IPR001106 -
Lsi07g00384 708 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 13 707 - -
Lsi07g00384 708 Pfam Aromatic amino acid lyase 55 530 IPR001106 -
Lsi07g00384 708 PANTHER HISTIDINE AMMONIA-LYASE 13 707 IPR001106 -
Lsi07g00384 708 Gene3D - 521 642 IPR023144 -
Lsi07g00384 708 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 17 698 IPR005922 GO:0005737|GO:0006559|GO:0016841
Lsi07g00384 708 Gene3D Fumarase/aspartase (Central domain) 255 703 - -
Lsi07g00384 708 SUPERFAMILY L-aspartase-like 17 707 IPR008948 GO:0003824
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00384 Lsi-Chr7:4114890 Lsi07g00386 Lsi-Chr7:4126752 0 dispersed
Lsi07g00382 Lsi-Chr7:4109383 Lsi07g00384 Lsi-Chr7:4114890 0 proximal
Lsi07g00383 Lsi-Chr7:4111093 Lsi07g00384 Lsi-Chr7:4114890 2.27E-83 tandem
Lsi07g00384 Lsi-Chr7:4114890 Lsi07g00385 Lsi-Chr7:4121676 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00384 K10775 - csv:116401606 1324.3