Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00385 ATGGCCCAAAATGTTTCTGCTCACCAAAATGCTTTAATGGAAAGCTTGTGCAGCACTCTTCAAGATCCACTCAACTGGGGTCTAGCGGCTGAGTCCATGAAGGGAAGTCATTTAGATGAGGTGAAGAGGATGGTCAAAGAGTATCGGAGGCCTTTGGTGAAGCTTGGAGGACAAACTCTCACCATTTCTCAAGTTGCTGCCATTGCCACTCGTGATAACGATGTCATTGTAGAATTAGCTGAGTCTGCGAGGGCTGGTGTCAAAGCAAGCAGCGACTGGGTCATGGAAAGCATGAGCAAAGGTACTGACAGCTATGGTGTCACTACTGGATTTGGTGCCACTTCTCATAGAAGAACCAATCAAGGTGGAGCTCTTCAAAAGGAGCTTATTCGATTCTTGAATTCTGGCATATTTGGAAATGGCGCTGAGTCAAGTCACACTTTGCCTCATTCTGCTACAAGAGCGGCCATGTTGGTGAGAATCAACACGCTCCTTCAAGGCTACTCTGGCATTAGATTCGAGATTTTGGAAGCCATTGCTAATCTCTTGAACCACAACGTCACTCCATGTTTGCCACTTAGAGGAACAATTACAGCTTCTGGGGATTTGGTTCCTTTGTCTTATATTGCAGGGTTGCTCACTGGTCGTCACAATTCGAAAGCTATCGGACCCGATGGAAAACCCCTTGATGCAAAGGCTGCTTTTGAACAAGCTGGTATTGATTCTGGGTTCTTTGAGTTGCAGCCTAAGGAAGGTCTTGCTCTTGTCAATGGCACTGCTGTCGGTTCTGGGTTGGCTTCCATTGTTCTCTTCGAGGCAAATATTTTGGCTGTTTTGTCCGAAATTCTATCTGCCATTTTTGCTGAGGTGATGCAAGGAAAGCCCGAATTCACCGACCATTTGACTCATAAGTTGAAGCACCACCCTGGCCAGATTGAAGCCGCTGCAATCATGGAGCACATTTTAGATGGAAGCTCCTACATGAAAACAGCAAAGAAATTGCATGAAATGGATCCTCTCCAAAAGCCCAAACAAGATCGTTATGCTCTTAGAACTTCTCCTCAATGGTTGGGTCCCTTGATTGAAGTGATTCGTTTCTCCACCAAGTCGATCGAGCGAGAGATTAATTCAGTCAACGACAATCCTTTGATTGATGTTTCAAGAAACAAGGCATTGCATGGAGGTAACTTCCAAGGAACGCCGATTGGAGTTTCCATGGACAACACTCGTTTGGCCGTTGCATCGATTGGAAAGCTCATGTTTGCCCAATTTTCAGAATTAGTCAACGATTTTTACAATAACGGTTTGCCTTCTAATCTTTCTGCAAGTAGAAACCCCAGTTTGGATTATGGATTCAAAGGTGCTGAGATTGCCATGGCCTCATATTGCTCTGAGCTTCAATATCTTGCAAATCCAGTCACGAGTCATGTTCAAAGCGCCGAGCAACACAACCAAGATGTTAACTCTCTTGGTTTAATTTCCTCAAGGAAAACAGCTGAAGCCATCGATATTCTCAAACTCATGTCTTCCACATTTTTAGTTGCTCTTTGTCAAGCAATTGACTTGAGGCATTTGGAGGAAAACTTGAAGAGTACTGTAAAAAACACAGTTAGCCAAGTAGCAAAGAAAGTGTTGACTACATCCTCTACTGGTGCACTTCACCCATCAAGATTTTGTGAGAAAGATCTACTCAAAGTTGTTGACCGAGAATACACTTTTGCATACATCGATGATCCATGCAGTGCTACCTACCCGCTTATGCAAAAGCTGAGGCAAATTCTTGTTGAGCATGCACTTGAAAATGGTGATAATGAAGATAACGCAAACACTTCAATCTTCCAAAAGATTGGTGCTTTTGAAGAGGAATTAAAGGCAGTTTTACCGAAAGAGGTTGAAAACGTAAGGCTGGCATATGAGAGTGGAAATTCTAAAATTGAAAATCAAATCAAGGATTGCAGATCCTACCCGTTATACAAATTTGTGAGAGAGGAGTTGGAAACAAAATTGCTAACCGGCGAAAAGGTGATATCTCCGGGAGAAGAGTGCGAGAAGGTATTCACAGCTTTATGTCATGGAAAAATGATCGACTCTATCTTCGAATGCTTGAAGGAGTGGAATGGAGCACCAATTCCTATTTGCTAA 2142 43.28 MAQNVSAHQNALMESLCSTLQDPLNWGLAAESMKGSHLDEVKRMVKEYRRPLVKLGGQTLTISQVAAIATRDNDVIVELAESARAGVKASSDWVMESMSKGTDSYGVTTGFGATSHRRTNQGGALQKELIRFLNSGIFGNGAESSHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAIANLLNHNVTPCLPLRGTITASGDLVPLSYIAGLLTGRHNSKAIGPDGKPLDAKAAFEQAGIDSGFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKTAKKLHEMDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAVASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLVALCQAIDLRHLEENLKSTVKNTVSQVAKKVLTTSSTGALHPSRFCEKDLLKVVDREYTFAYIDDPCSATYPLMQKLRQILVEHALENGDNEDNANTSIFQKIGAFEEELKAVLPKEVENVRLAYESGNSKIENQIKDCRSYPLYKFVREELETKLLTGEKVISPGEECEKVFTALCHGKMIDSIFECLKEWNGAPIPIC 713
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4121676 4123817 + Lsi07G003850.1 Lsi07g00385 666807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00385 713 CDD PAL-HAL 58 523 IPR001106 -
Lsi07g00385 713 SUPERFAMILY L-aspartase-like 22 713 IPR008948 GO:0003824
Lsi07g00385 713 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 22 703 IPR005922 GO:0005737|GO:0006559|GO:0016841
Lsi07g00385 713 Gene3D - 526 647 IPR023144 -
Lsi07g00385 713 Gene3D Fumarase/aspartase (Central domain) 260 708 - -
Lsi07g00385 713 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 18 713 - -
Lsi07g00385 713 PANTHER HISTIDINE AMMONIA-LYASE 18 713 IPR001106 -
Lsi07g00385 713 Gene3D - 14 259 IPR024083 -
Lsi07g00385 713 Pfam Aromatic amino acid lyase 60 535 IPR001106 -
Lsi07g00385 713 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 195 211 IPR022313 GO:0016841
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01329 Lsi-Chr1:11494207 Lsi07g00385 Lsi-Chr7:4121676 0 dispersed
Lsi01g01330 Lsi-Chr1:11499128 Lsi07g00385 Lsi-Chr7:4121676 0 dispersed
Lsi01g01331 Lsi-Chr1:11504847 Lsi07g00385 Lsi-Chr7:4121676 0 dispersed
Lsi01g01332 Lsi-Chr1:11510769 Lsi07g00385 Lsi-Chr7:4121676 0 dispersed
Lsi01g01333 Lsi-Chr1:11521122 Lsi07g00385 Lsi-Chr7:4121676 0 dispersed
Lsi07g00382 Lsi-Chr7:4109383 Lsi07g00385 Lsi-Chr7:4121676 0 dispersed
Lsi07g00383 Lsi-Chr7:4111093 Lsi07g00385 Lsi-Chr7:4121676 2.16E-86 dispersed
Lsi07g00384 Lsi-Chr7:4114890 Lsi07g00385 Lsi-Chr7:4121676 0 tandem
Lsi07g00385 Lsi-Chr7:4121676 Lsi07g00386 Lsi-Chr7:4126752 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00385 K10775 - csv:116401606 1336.63