Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00386 ATGGAGCCACTTCCCTATTTAAGCACACAGCTTCTCATTCTCTCTTCACAAAATTACTCAGCTAATTCTGAGGAATTAAACCAATTCATAAACCCAAACCCACAATTTCATATCTTCACTCTCATCATCTTTGTTTCTGCTCACCAAAATGCTTCAATGGAGAGCTTGTGTAGCACTCTTCAGGATCCACTCAACTGGGGTCTGGCAGCTGAGTCCATGAAGGGAAGTCATTTGGATGAGGTGAAGAGGATGGTGGAAGAGTATCGAAGGCCTTTGGTGAAGCTTGGAGGACAAACTCTCACCATTTCTCAAGTTGCTGCCATTGCCACTCATGATAACGATGTCATCGTAGAATTGGCTGAGTCTGCCAGGGTTGGAGTCAAAGCTAGCAGCGACTGGATCATGGAAAGCATGAGCAAAGGTACTGACAGCTATGGTGTCACTACTGGATTTGGTGCCACTTCTCATAGAAGAACCAATCAAGGTGGAGCTCTTCAAAAGGAGCTTATTCGATTCTTGAATTCTGGCATATTTGGAAACGGCGCTGAAGCGGCCATGTTGGTGAGAATCAACACGCTCCTTCAAGGCTACTCTGGCATTAGATTCGAGATTTTGGAAGCCATTGCTAATCTCTTGAACCACAACGTCACTCCATGTTTGCCACTTAGAGGAACAATTACAGCTTCTGGGGATTTAGTTCCTTTGTCTTATATTGCAGGGTTGCTCACTGGTCGTCACAATTCGAAAGCTATCGGACCCGATGGAGAACCCCTTGATGCAAAGGCTGCTTTTGAAAAAGCTGGTATTGATTCTGGGTTCTTTGAGTTGCAGCCTAAGGAAGGTCTTGCTCTTGTCAATGGCACCGCTGTCGGTTCTGGGTTGGCTTCCATTGTTCTCTTCGAGGCAAATATTTTGGCTGTTTTGTCTGAAATTTTATCTGCTATTTTTGCTGAGGTGATGCAAGGAAAGCCCGAATTCACCAACCATTTGACCCATAAGTTGAAGCACCACCCTGGCCAGATTGAAGCAACTGCAATCATGGAGCACATTTTAGATGGAAGCTCCTACATGAAAACAGCAAAGAAATTGCATGAAATGGATCCTCTCCAAAAGCCCAAACAAGATCGTTATGCTCTTAGAACTTCTCCTCAATGGTTGGGTCCCTTGATTGAAGTGATTCGTTTCTCCACCAAGTCGATCGAGCGAGAGATTAATTCAGTCAACGACAACCCTTTGATTGATGTTTCAAGAAACAAGGCATTGCATGGAGGTAACTTCCAAGGAACGCCGATTGGAGTTTCCATGGACAACACTCGTTTGGCCGTTGCATCGATTGGAAAGCTCATGTTTGCCCAATTTTCAGAATTAGTCAACGATTTTTACAATAACGGTTTGCCTTCTAATCTTTCTGCAAGTAGAAACCCCAGTTTGGATTATGGATTCAAAGGTGCTGAGATTGCCATGGCCTCATATTGCTCTGAGCTTCAATATCTTGCAAATCCAGTCACGAGTCATGTTCAAAGCGCCGAGCAACACAACCAAGATGTTAACTCTCTTGGTTTAATTTCCTCAAGGAAAACAGCTGAAGCCATCGATATTCTCAAACTCATGTCTTCCACATTTTTAGTTGCTCTTTGTCAAGCAATTGACTTGAGGCATTTGGAGGAAAACTTGAAGAGCACTGTAAAAAACACAGTTAGCCAAGTAGCAAAGAAAGTGTTGACTACATCCTCTACTGGTGCACTTCACCCATCAAGATTTTGTGAGAAAGATCTACTTAAAGTTGTTGACCGAGAATACACTTTTGCATACATCGATGATCCATGCAGTGCTACCTACCCGCTTATGCAAAAGCTGAGGCAAATTCTTGTTGAGCATGCACTTGAAAATGGTGATAATGAAGATAACGCAAACACTTCAATCTTCCAAAAGATTGGTGCTTTTGAAGAGGAATTAAAGGCAGTTTTACCGAAAGAGGTTGAAAACGTAAGGCTGGCATATGAGAGTGGAAATTCTAAAATTGAAAATCAAATCAAGGATTGCAGATCCTACCCGTTATACAAATTTGTGAGAGAGGAGTTGGAAACAAAATTGCTAACTGGCGAAAAGGTGATATCTCCGGGAGAAGAGTGCGAGAAGGTATTCACAGCTTTATGTCATGGAAAAATGATCGACTCTATCTTCGAATGCTTGAAGGAGTGGAATGGAACACCAATTCCTATATGCTAA 2229 42.71 MEPLPYLSTQLLILSSQNYSANSEELNQFINPNPQFHIFTLIIFVSAHQNASMESLCSTLQDPLNWGLAAESMKGSHLDEVKRMVEEYRRPLVKLGGQTLTISQVAAIATHDNDVIVELAESARVGVKASSDWIMESMSKGTDSYGVTTGFGATSHRRTNQGGALQKELIRFLNSGIFGNGAEAAMLVRINTLLQGYSGIRFEILEAIANLLNHNVTPCLPLRGTITASGDLVPLSYIAGLLTGRHNSKAIGPDGEPLDAKAAFEKAGIDSGFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEILSAIFAEVMQGKPEFTNHLTHKLKHHPGQIEATAIMEHILDGSSYMKTAKKLHEMDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAVASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLVALCQAIDLRHLEENLKSTVKNTVSQVAKKVLTTSSTGALHPSRFCEKDLLKVVDREYTFAYIDDPCSATYPLMQKLRQILVEHALENGDNEDNANTSIFQKIGAFEEELKAVLPKEVENVRLAYESGNSKIENQIKDCRSYPLYKFVREELETKLLTGEKVISPGEECEKVFTALCHGKMIDSIFECLKEWNGTPIPIC 742
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4126752 4129201 + Lsi07G003860.1 Lsi07g00386 666808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00386 742 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 224 240 IPR022313 GO:0016841
Lsi07g00386 742 Gene3D - 555 676 IPR023144 -
Lsi07g00386 742 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 62 732 IPR005922 GO:0005737|GO:0006559|GO:0016841
Lsi07g00386 742 CDD PAL-HAL 98 552 IPR001106 -
Lsi07g00386 742 Gene3D Fumarase/aspartase (Central domain) 289 736 - -
Lsi07g00386 742 SUPERFAMILY L-aspartase-like 62 742 IPR008948 GO:0003824
Lsi07g00386 742 Gene3D - 54 288 IPR024083 -
Lsi07g00386 742 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 59 742 - -
Lsi07g00386 742 PANTHER HISTIDINE AMMONIA-LYASE 59 742 IPR001106 -
Lsi07g00386 742 Pfam Aromatic amino acid lyase 100 564 IPR001106 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00384 Lsi-Chr7:4114890 Lsi07g00386 Lsi-Chr7:4126752 0 dispersed
Lsi07g00385 Lsi-Chr7:4121676 Lsi07g00386 Lsi-Chr7:4126752 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00386 K10775 - csv:116401606 1300.03